I am having trouble getting AFNI to read my stimfiles for 3ddeconvolve. After running the script I get the following error:
*+ WARNING: '-stim_times 1' didn't read any good times from file '/data/T32/Gollan_LexSwitch/LEX_logfiles/TG_B7_20170608.lex.EWO.1D'
*+ WARNING: '-stim_times 2' didn't read any good times from file '/data/T32/Gollan_LexSwitch/LEX_logfiles/TG_B7_20170608.lex.SWOF.1D'
*+ WARNING: '-stim_times 3' didn't read any good times from file '/data/T32/Gollan_LexSwitch/LEX_logfiles/TG_B7_20170608.lex.EWOC.1D'
*+ WARNING: '-stim_times 4' didn't read any good times from file '/data/T32/Gollan_LexSwitch/LEX_logfiles/TG_B7_20170608.lex.SWO.1D'
*+ WARNING: '-stim_times 5' didn't read any good times from file '/data/T32/Gollan_LexSwitch/LEX_logfiles/TG_B7_20170608.lex.EWOF.1D'
*+ WARNING: '-stim_times 6' didn't read any good times from file '/data/T32/Gollan_LexSwitch/LEX_logfiles/TG_B7_20170608.lex.SWOC.1D'
++ 3dDeconvolve: AFNI version=AFNI_17.2.16 (Jul 8 2015) [64-bit]
++ Authored by: B. Douglas Ward, et al.
++ current memory malloc-ated = 330,260 bytes (about 330 thousand [kilo])
++ loading dataset TG_B7_20170608.lex.allruns.blurTo6.scale+tlrc.
++ current memory malloc-ated = 743,788,529 bytes (about 744 million [mega])
++ Skipping check for initial transients
++ Input polort=3; Longest run=305.0 s; Recommended minimum polort=3 ++ OK ++
++ -stim_times using TR=2.5 s for stimulus timing conversion
++ -stim_times using TR=2.5 s for any -iresp output datasets
++ [you can alter the -iresp TR via the -TR_times option]
++ ** -stim_times NOTE ** guessing GLOBAL times if 1 time per line; LOCAL otherwise
*+ WARNING: -stim_times 1 has all times equal to '*' ?!?!
++ ** GUESSED ** -stim_times 1 using GLOBAL times
*+ WARNING: '-stim_times 1' (GLOBAL) has 6 '*' fillers; do you want LOCAL times?
*+ WARNING: !! '-stim_times 1' file '/data/T32/Gollan_LexSwitch/LEX_logfiles/TG_B7_20170608.lex.EWO.1D' has no good stimulus time values
*+ WARNING: -stim_times 2 has all times equal to '*' ?!?!
++ ** GUESSED ** -stim_times 2 using GLOBAL times
*+ WARNING: '-stim_times 2' (GLOBAL) has 6 '*' fillers; do you want LOCAL times?
*+ WARNING: !! '-stim_times 2' file '/data/T32/Gollan_LexSwitch/LEX_logfiles/TG_B7_20170608.lex.SWOF.1D' has no good stimulus time values
*+ WARNING: -stim_times 3 has all times equal to '*' ?!?!
++ ** GUESSED ** -stim_times 3 using GLOBAL times
*+ WARNING: '-stim_times 3' (GLOBAL) has 6 '*' fillers; do you want LOCAL times?
*+ WARNING: !! '-stim_times 3' file '/data/T32/Gollan_LexSwitch/LEX_logfiles/TG_B7_20170608.lex.EWOC.1D' has no good stimulus time values
*+ WARNING: -stim_times 4 has all times equal to '*' ?!?!
++ ** GUESSED ** -stim_times 4 using GLOBAL times
*+ WARNING: '-stim_times 4' (GLOBAL) has 6 '*' fillers; do you want LOCAL times?
*+ WARNING: !! '-stim_times 4' file '/data/T32/Gollan_LexSwitch/LEX_logfiles/TG_B7_20170608.lex.SWO.1D' has no good stimulus time values
*+ WARNING: -stim_times 5 has all times equal to '*' ?!?!
++ ** GUESSED ** -stim_times 5 using GLOBAL times
*+ WARNING: '-stim_times 5' (GLOBAL) has 6 '*' fillers; do you want LOCAL times?
*+ WARNING: !! '-stim_times 5' file '/data/T32/Gollan_LexSwitch/LEX_logfiles/TG_B7_20170608.lex.EWOF.1D' has no good stimulus time values
*+ WARNING: -stim_times 6 has all times equal to '*' ?!?!
++ ** GUESSED ** -stim_times 6 using GLOBAL times
*+ WARNING: '-stim_times 6' (GLOBAL) has 6 '*' fillers; do you want LOCAL times?
*+ WARNING: !! '-stim_times 6' file '/data/T32/Gollan_LexSwitch/LEX_logfiles/TG_B7_20170608.lex.SWOC.1D' has no good stimulus time values
My stim files look like this currently:
15 *
105
60
195
150
240
I added the asterisk to the first stim time so that it was not mistaken for global time. Do I need to add an asterisk after each stim time? I have 6 runs and there is exactly one stimulus per run? I also used the file_tool -test -infile command and got the following for each of the 6 stim files:
TG_B7_20170608.lex.SWO.1D has 0 bad characters
TG_B7_20170608.lex.SWO.1D file type: UNIX
Any help would be greatly appreciated!
-Chelsea
