History of AFNI updates  

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March 01, 2018 02:03PM
You should be able to use "whereami -show_atlases" to see all the available atlases and their corresponding template spaces. If you want all these to show up in the Draw Dataset plugin, set AFNI_ATLAS_LIST to ALL in your .afnirc file. The CA_N27_ML or CA_N27_MPM atlas may be what you want. The atlases with names ending in MNIA are not in MNI space, but in a variant of MNI called MNI_ANAT space with the (0,0,0) at the Anterior Commissure. You can also use a copy of an atlas, or extract a particular region with 3dcalc. If you have atlases available elsewhere, these can be merged into standard AFNI use by using the script @Atlasize. Let me know if you run into any problems.
Subject Author Posted

Draw ROI in afni using atlases

Zhang Yu March 01, 2018 04:54AM

Re: Draw ROI in afni using atlases

Daniel Glen March 01, 2018 02:03PM

Re: Draw ROI in afni using atlases

Zhang Yu March 01, 2018 03:40PM

Re: Draw ROI in afni using atlases

Daniel Glen March 01, 2018 04:44PM

Re: Draw ROI in afni using atlases

Zhang Yu March 02, 2018 03:10AM

Re: Draw ROI in afni using atlases

Daniel Glen March 05, 2018 12:00PM

Re: Draw ROI in afni using atlases

Zhang Yu March 05, 2018 12:55PM

Re: Draw ROI in afni using atlases

Daniel Glen March 05, 2018 01:45PM

Brainnetome Atlas! Attachments

Daniel Glen March 05, 2018 06:37PM

Re: Brainnetome Atlas!

Zhang Yu March 09, 2018 04:36AM