AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 20, 2018 09:49AM
Hi Tracy,

Using "3dresample -dxyz 2.5 2.5 2.5" may or may not be correct.
It depends on having the same bounding box and orientation, too.
So -master is a more sure way to get them to match.


The 3dToutcount error does not seem to have anything to do with
the resampling, as it is complaining about not being able to
locate the pb00.*.tcat dataset. The command shown there does
not have a view on it. Is there a missing +orig? Given that,
are you actually editing the proc script? It is better to
alter the afni_proc.py command and not the proc script, unless
it is absolutely necessary.

- rick
Subject Author Posted

Create ventricle mask from MNI template

TracyW March 16, 2018 04:28AM

Re: Create ventricle mask from MNI template

Daniel Glen March 16, 2018 06:05PM

Re: Create ventricle mask from MNI template

TracyW March 17, 2018 07:29AM

Re: Create ventricle mask from MNI template

rick reynolds March 19, 2018 10:15AM

Re: Create ventricle mask from MNI template

TracyW March 20, 2018 08:41AM

Re: Create ventricle mask from MNI template

rick reynolds March 20, 2018 09:49AM

Re: Create ventricle mask from MNI template

TracyW March 21, 2018 07:17AM

Re: Create ventricle mask from MNI template

rick reynolds March 23, 2018 03:17PM