afni.nimh.nih.gov

Dear experts,

i am trying to install AFNI/SUMA on my Ubuntu 16.04 LTS. I am following the instructions of [afni.nimh.nih.gov].
My default shell is tcsh.
My problem located in the step "Install R". I performed copy paste commands from tcsh.
My system don't recognize command
rPkgsInstall -pkgs ALL
I take the message: Command not found.

it will be too helpful for me to give some instructions

Thank you in advance,
Stratos

PS : The text below is copy-pasted from my terminal, when i had run the previous command "sudo tcsh @add_rcran_ubuntu.tcsh". Maybe is useful for you.

++ Linux codename is: xenial

++ Adding R-cran mirror to repository list.
Executing: /tmp/tmp.xd1Uk0D6Y2/gpg.1.sh --keyserver
keyserver.ubuntu.com
--recv-keys
E084DAB9
gpg: requesting key E084DAB9 from hkp server keyserver.ubuntu.com
gpg: key E084DAB9: "Michael Rutter <marutter@gmail.com>" not changed
gpg: Total number processed: 1
gpg: unchanged: 1
++ Going to install new R now, removing any old one first.
Reading package lists... Done
Building dependency tree
Reading state information... Done
Package 'r-base-core' is not installed, so not removed
Package 'r-base' is not installed, so not removed
Package 'r-base-dev' is not installed, so not removed
The following packages were automatically installed and are no longer required:
acpid cdbs checkbox-ng dh-translations gstreamer1.0-clutter intltool
libappstream3 libatk-wrapper-java libatk-wrapper-java-jni libbind9-90
libblas-common libblas-dev libblas3 libbz2-dev libcamel-1.2-52
libcolamd2.8.0 libcr0 libdns100 libebook-contacts-1.2-1 libecal-1.2-18
libedata-cal-1.2-27 libedataserver-1.2-20 libenca0 libgee2 libgif4
libglew1.10 libglewmx1.10 libgnomevfs2-0 libgnomevfs2-common
libgnutls-deb0-28:i386 libgtop2-10 libimobiledevice4 libisc95 libisccc90
libisccfg90 libisl13 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev
liblapack-dev liblapack3 libllvm3.6v5 libllvm3.6v5:i386 liblouis2 liblwres90
liblzma-dev libmircommon5 libmysqlclient18 libmysqlclient18:i386
libncurses5-dev libnetcdf7 libnl-route-3-200 libntdb1 libpango1.0-0
libpcre3-dev libpcre32-3 libpcrecpp0v5 libpgm-5.1-0 libpoppler52 libpth20
libqmi-glib1 libqpdf13v5 libraw10 libreadline-dev libreadline6-dev libsctp1
libsodium13 libsoundtouch0 libtinfo-dev libusbmuxd2 libvpx2 libx264-146
libx265-59 libzmq3 linux-headers-4.2.0-16 linux-headers-4.2.0-16-generic
linux-headers-4.2.0-42 linux-headers-4.2.0-42-generic
linux-headers-4.4.0-112 linux-headers-4.4.0-112-generic
linux-image-4.2.0-16-generic linux-image-4.2.0-42-generic
linux-image-4.4.0-112-generic linux-image-extra-4.2.0-16-generic
linux-image-extra-4.2.0-42-generic linux-image-extra-4.4.0-112-generic
lksctp-tools mpi-default-bin python-cffi python-characteristic
python-dbus-dev python-ntdb python-ply python-pycparser python-scour
python3-cffi python3-checkbox-ng python3-ply python3-pycparser
qml-module-qtquick-dialogs qml-module-qtquick-localstorage
qml-module-qtquick-privatewidgets qtdeclarative5-localstorage-plugin
qtdeclarative5-qtfeedback-plugin qtdeclarative5-ubuntu-web-plugin r-doc-html
telepathy-indicator toshset unity-scope-audacious unity-scope-clementine
unity-scope-gmusicbrowser unity-scope-gourmet unity-scope-guayadeque
unity-scope-musique
Use 'sudo apt autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 53 not upgraded.
W: Target Packages (Packages) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:54
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W: Target Translations (en) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:58
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Err:105 [gr.archive.ubuntu.com] xenial/main Sources
403 Forbidden
Ign:106 [gr.archive.ubuntu.com] xenial/restricted Sources
Ign:107 [gr.archive.ubuntu.com] xenial/universe Sources
Ign:108 [gr.archive.ubuntu.com] xenial/multiverse Sources
Ign:109 [gr.archive.ubuntu.com] xenial/main amd64 Packages
Ign:110 [gr.archive.ubuntu.com] xenial/main i386 Packages
Ign:111 [gr.archive.ubuntu.com] xenial/main Translation-en
Ign:112 [gr.archive.ubuntu.com] xenial/main amd64 DEP-11 Metadata
Ign:113 [gr.archive.ubuntu.com] xenial/main DEP-11 64x64 Icons
Ign:114 [gr.archive.ubuntu.com] xenial/restricted amd64 Packages
Ign:115 [gr.archive.ubuntu.com] xenial/restricted i386 Packages
Err:128 [gr.archive.ubuntu.com] xenial-updates/main Sources
403 Forbidden
Ign:129 [gr.archive.ubuntu.com] xenial-updates/restricted Sources
Ign:130 [gr.archive.ubuntu.com] xenial-updates/universe Sources
Ign:131 [gr.archive.ubuntu.com] xenial-updates/multiverse Sources
Ign:132 [gr.archive.ubuntu.com] xenial-updates/main amd64 Packages
Ign:133 [gr.archive.ubuntu.com] xenial-updates/main i386 Packages
Ign:135 [gr.archive.ubuntu.com] xenial-updates/main Translation-en
Ign:136 [gr.archive.ubuntu.com] xenial-updates/main amd64 DEP-11 Metadata
Ign:137 [gr.archive.ubuntu.com] xenial-updates/main DEP-11 64x64 Icons
Ign:138 [gr.archive.ubuntu.com] xenial-updates/restricted amd64 Packages
Ign:139 [gr.archive.ubuntu.com] xenial-updates/restricted i386 Packages
Reading package lists... Done
W: Target Packages (Packages) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:54
W: Target Translations (en_US) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:54
W: Target Translations (en) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:54
W: Target Packages (Packages) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:55
W: Target Translations (en_US) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:55
W: Target Translations (en) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:55
W: Target Packages (Packages) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:56
W: Target Translations (en_US) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:56
W: Target Translations (en) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:56
W: Target Packages (Packages) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:57
W: Target Translations (en_US) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:57
W: Target Translations (en) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:57
W: Target Packages (Packages) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:58
W: Target Translations (en_US) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:58
W: Target Translations (en) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:58
W: The repository '[gr.archive.ubuntu.com] xenial Release' does not have a Release file.
N: Data from such a repository can't be authenticated and is therefore potentially dangerous to use.
N: See apt-secure(8) manpage for repository creation and user configuration details.
W: The repository '[gr.archive.ubuntu.com] xenial-updates Release' does not have a Release file.
N: Data from such a repository can't be authenticated and is therefore potentially dangerous to use.
N: See apt-secure(8) manpage for repository creation and user configuration details.
W: The repository '[gr.archive.ubuntu.com] xenial-backports Release' does not have a Release file.
N: Data from such a repository can't be authenticated and is therefore potentially dangerous to use.
N: See apt-secure(8) manpage for repository creation and user configuration details.
E: Failed to fetch [gr.archive.ubuntu.com] 403 Forbidden
E: Failed to fetch [gr.archive.ubuntu.com] 403 Forbidden
E: Failed to fetch [gr.archive.ubuntu.com] 403 Forbidden
E: Some index files failed to download. They have been ignored, or old ones used instead.
W: Target Packages (Packages) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:54
W: Target Translations (en_US) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:54
W: Target Translations (en) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:54
W: Target Packages (Packages) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:55
W: Target Translations (en_US) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:55
W: Target Translations (en) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:55
W: Target Packages (Packages) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:56
W: Target Translations (en_US) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:56
W: Target Translations (en) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:56
W: Target Packages (Packages) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:57
W: Target Translations (en_US) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:57
W: Target Translations (en) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:57
W: Target Packages (Packages) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:58
W: Target Translations (en_US) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:58
W: Target Translations (en) is configured multiple times in /etc/apt/sources.list:53 and /etc/apt/sources.list:58
Reading package lists... Done
Building dependency tree
Reading state information... Done
The following packages were automatically installed and are no longer required:
acpid checkbox-ng gstreamer1.0-clutter libappstream3 libatk-wrapper-java
libatk-wrapper-java-jni libbind9-90 libcamel-1.2-52 libcolamd2.8.0 libcr0
libdns100 libebook-contacts-1.2-1 libecal-1.2-18 libedata-cal-1.2-27
libedataserver-1.2-20 libenca0 libgee2 libgif4 libglew1.10 libglewmx1.10
libgnomevfs2-0 libgnomevfs2-common libgnutls-deb0-28:i386 libgtop2-10
libimobiledevice4 libisc95 libisccc90 libisccfg90 libisl13 libllvm3.6v5
libllvm3.6v5:i386 liblouis2 liblwres90 libmircommon5 libmysqlclient18
libmysqlclient18:i386 libnetcdf7 libnl-route-3-200 libntdb1 libpango1.0-0
libpgm-5.1-0 libpoppler52 libpth20 libqmi-glib1 libqpdf13v5 libraw10
libsctp1 libsodium13 libsoundtouch0 libusbmuxd2 libvpx2 libx264-146
libx265-59 libzmq3 linux-headers-4.2.0-16 linux-headers-4.2.0-16-generic
linux-headers-4.2.0-42 linux-headers-4.2.0-42-generic
linux-headers-4.4.0-112 linux-headers-4.4.0-112-generic
linux-image-4.2.0-16-generic linux-image-4.2.0-42-generic
linux-image-4.4.0-112-generic linux-image-extra-4.2.0-16-generic
linux-image-extra-4.2.0-42-generic linux-image-extra-4.4.0-112-generic
lksctp-tools python-cffi python-characteristic python-dbus-dev python-ntdb
python-ply python-pycparser python3-cffi python3-checkbox-ng python3-ply
python3-pycparser qml-module-qtquick-dialogs qml-module-qtquick-localstorage
qml-module-qtquick-privatewidgets qtdeclarative5-localstorage-plugin
qtdeclarative5-qtfeedback-plugin qtdeclarative5-ubuntu-web-plugin
telepathy-indicator toshset unity-scope-audacious unity-scope-clementine
unity-scope-gmusicbrowser unity-scope-gourmet unity-scope-guayadeque
unity-scope-musique
Use 'sudo apt autoremove' to remove them.
The following additional packages will be installed:
icu-devtools libicu-dev r-base-core r-cran-boot r-cran-class r-cran-cluster
r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass
r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart
r-cran-spatial r-cran-survival r-recommended
Suggested packages:
icu-doc ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base
texlive-latex-base texlive-generic-recommended texlive-fonts-recommended
texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
texlive-latex-extra texinfo r-cran-rsprng
The following NEW packages will be installed:
icu-devtools libicu-dev r-base-core r-base-dev r-cran-boot r-cran-class
r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth
r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet
r-cran-rmpi r-cran-rpart r-cran-spatial r-cran-survival r-recommended
0 upgraded, 21 newly installed, 0 to remove and 53 not upgraded.
Need to get 191 kB/48,0 MB of archives.
After this operation, 100 MB of additional disk space will be used.
Err:1 [gr.archive.ubuntu.com] xenial/universe amd64 r-cran-rmpi amd64 0.6-5-1build2
403 Forbidden
E: Failed to fetch [gr.archive.ubuntu.com] 403 Forbidden

E: Unable to fetch some archives, maybe run apt-get update or try with --fix-missing?
Reading package lists... Done
Building dependency tree
Reading state information... Done
The following packages were automatically installed and are no longer required:
acpid cdbs checkbox-ng dh-translations gstreamer1.0-clutter intltool
libappstream3 libatk-wrapper-java libatk-wrapper-java-jni libbind9-90
libblas-common libblas-dev libblas3 libbz2-dev libcamel-1.2-52
libcolamd2.8.0 libcr0 libdns100 libebook-contacts-1.2-1 libecal-1.2-18
libedata-cal-1.2-27 libedataserver-1.2-20 libenca0 libgee2 libgif4
libglew1.10 libglewmx1.10 libgnomevfs2-0 libgnomevfs2-common
libgnutls-deb0-28:i386 libgtop2-10 libimobiledevice4 libisc95 libisccc90
libisccfg90 libisl13 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev
liblapack-dev liblapack3 libllvm3.6v5 libllvm3.6v5:i386 liblouis2 liblwres90
liblzma-dev libmircommon5 libmysqlclient18 libmysqlclient18:i386
libncurses5-dev libnetcdf7 libnl-route-3-200 libntdb1 libpango1.0-0
libpcre3-dev libpcre32-3 libpcrecpp0v5 libpgm-5.1-0 libpoppler52 libpth20
libqmi-glib1 libqpdf13v5 libraw10 libreadline-dev libreadline6-dev libsctp1
libsodium13 libsoundtouch0 libtinfo-dev libusbmuxd2 libvpx2 libx264-146
libx265-59 libzmq3 linux-headers-4.2.0-16 linux-headers-4.2.0-16-generic
linux-headers-4.2.0-42 linux-headers-4.2.0-42-generic
linux-headers-4.4.0-112 linux-headers-4.4.0-112-generic
linux-image-4.2.0-16-generic linux-image-4.2.0-42-generic
linux-image-4.4.0-112-generic linux-image-extra-4.2.0-16-generic
linux-image-extra-4.2.0-42-generic linux-image-extra-4.4.0-112-generic
lksctp-tools mpi-default-bin python-cffi python-characteristic
python-dbus-dev python-ntdb python-ply python-pycparser python-scour
python3-cffi python3-checkbox-ng python3-ply python3-pycparser
qml-module-qtquick-dialogs qml-module-qtquick-localstorage
qml-module-qtquick-privatewidgets qtdeclarative5-localstorage-plugin
qtdeclarative5-qtfeedback-plugin qtdeclarative5-ubuntu-web-plugin r-doc-html
telepathy-indicator toshset unity-scope-audacious unity-scope-clementine
unity-scope-gmusicbrowser unity-scope-gourmet unity-scope-guayadeque
unity-scope-musique
Use 'sudo apt autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 53 not upgraded.