AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 30, 2018 09:38AM
Just eyeballing the tracking results, it looks good, yup. The corpus callosum looks uniformly red connecting the hemispheres, the cingulate bundles are green (running anterior <-> posterior); the cortico-cortical fibers look to have appropriate colors (=directionality) at their endpoints; there looks to be whole brain coverage.

While looking at that tractographic image, if you go to the SUMA control panel (hover the mouse over the SUMA window and hit ctrl+s, to open it if it isn't already), then you can right click anywhere on the tracts to get the control panel for tracts, and in the lower left corner is a button called "masks"-- hit it once/twice and a faint ball will appear in the tracts, so that only tracts passing through it are shown. While it is translucent/dotted, it is stationary; if you right-click on it, you can turn it into "mobile mode" (-> its appearance will change and it will look like a geodesic pattern of connected triangles); now, wherever you rightclick on the tracts, the mask-ball will move, and you can look at more localized patterns to make sure you see things like: cortical-spinal tracts, genu/splenium, etc.

--pt
Subject Author Posted

How to correct DWI EPI distortion with only one b value PA volume? Attachments

EXP.2086 May 02, 2018 10:20PM

Re: How to correct DWI EPI distortion with only one b value PA volume?

ptaylor May 03, 2018 05:59AM

Re: How to correct DWI EPI distortion with only one b value PA volume? Attachments

EXP.2086 May 03, 2018 08:57AM

Re: How to correct DWI EPI distortion with only one b value PA volume?

ptaylor May 03, 2018 01:03PM

Re: How to correct DWI EPI distortion with only one b value PA volume? Attachments

EXP.2086 May 04, 2018 04:33AM

Re: How to correct DWI EPI distortion with only one b value PA volume?

ptaylor May 04, 2018 08:11AM

Re: How to correct DWI EPI distortion with only one b value PA volume? Attachments

EXP.2086 May 24, 2018 11:49AM

Re: How to correct DWI EPI distortion with only one b value PA volume?

ptaylor May 30, 2018 09:38AM

Re: How to correct DWI EPI distortion with only one b value PA volume? Attachments

EXP.2086 May 25, 2018 12:58PM

Re: How to correct DWI EPI distortion with only one b value PA volume?

ptaylor May 30, 2018 10:17AM

Re: How to correct DWI EPI distortion with only one b value PA volume? Attachments

EXP.2086 June 02, 2018 03:39AM

Re: How to correct DWI EPI distortion with only one b value PA volume?

ptaylor June 03, 2018 01:50PM

Re: How to correct DWI EPI distortion with only one b value PA volume?

EXP.2086 May 24, 2018 12:06PM

Re: How to correct DWI EPI distortion with only one b value PA volume?

ptaylor May 30, 2018 10:18AM