afni_proc.py -subj_id $subj \
-script proc.$subj -scr_overwrite \
-blocks despike tshift align tlrc volreg blur mask regress \
-copy_anat $anat_dir/anat+orig \
-dsets $epi_dir/r01+orig.HEAD \
-tcat_remove_first_trs 5 \
-volreg_align_to third \
-volreg_align_e2a \
-volreg_tlrc_warp \
-blur_size 6.0 \
-regress_censor_motion 3.0 \
-regress_bandpass 0.01 0.1 \
-regress_apply_mot_types demean deriv \
-regress_est_blur_errts
I use Bash On Ubuntu and ı performed 2 paralel terminals. But each one has just different adresses. This one is for MOCO. It has only 2 differences from NOTMOCO which are $epi_dir and $anat_dir.
Edited 1 time(s). Last edit at 05/09/2018 07:02PM by trabz.