History of AFNI updates  

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August 29, 2018 02:44PM
Below is my full script. I tried to re-order my blocks by putting the volreg blocks prior to the tlrc_NL blocks but I am still receiving the same error message

Script:

afni_proc.py -subj_id SSwarp_proc_9409 -script SSwarp_proc_9409 \
-scr_overwrite -blocks tshift align tlrc volreg blur mask scale regress \
-copy_anat /home/bmiadmin/Tamara/PRR_Analysis/9409/9409.anat+orig \
-dsets /home/bmiadmin/Tamara/PRR_Analysis/9409/9409.1+orig.HEAD \
/home/bmiadmin/Tamara/PRR_Analysis/9409/9409.2+orig.HEAD \
/home/bmiadmin/Tamara/PRR_Analysis/9409/9409.3+orig.HEAD \
/home/bmiadmin/Tamara/PRR_Analysis/9409/9409.4+orig.HEAD \
-tcat_remove_first_trs 0 \
-volreg_align_to last -volreg_align_e2a -volreg_tlrc_warp \
-tlrc_base MNI152_2009_template_SSW.nii.gz \
-tlrc_NL_warp -tlrc_NL_warped_dsets \
anatQQ.MNI152_2009_template_SSW.nii.gz.nii \
anatQQ.MNI152_2009_template_SSW.nii.gz.aff12.1D \
anatQQ.MNI152_2009_template_SSW.nii.gz_WARP.nii \
-blur_size 4.0 -regress_stim_times \
/home/bmiadmin/Tamara/PRR_Analysis/9409/NonRevP_learn_corr_fed.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/NonRevP_learn_corr.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/NonRevP_learn_incor_fed.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/NonRevP_learn_incor.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/NonRevP_perf_corr_fed.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/NonRevP_perf_corr.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/NonRevP_perf_incor_fed.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/NonRevP_perf_incor.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/RevP_acq_corr_fed.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/RevP_acq_corr.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/RevP_acq_incor_fed.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/RevP_acq_incor.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/RevP_rev_corr_fed.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/RevP_rev_corr.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/RevP_rev_incor_fed.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/RevP_rev_incor.txt \
-regress_stim_labels NonRevP_learn_corr_fed NonRevP_learn_corr \
NonRevP_learn_incor_fed NonRevP_learn_incor NonRevP_perf_corr_fed \
NonRevP_perf_corr NonRevP_perf_incor_fed NonRevP_perf_incor \
RevP_acq_corr_fed RevP_acq_corr RevP_acq_incor_fed RevP_acq_incor \
RevP_rev_corr_fed RevP_rev_corr RevP_rev_incor_fed RevP_rev_incor \
-regress_basis dmBLOCK -regress_stim_types AM1 -regress_censor_motion \
2.0 -regress_censor_outliers 0.1 -regress_apply_mot_types demean deriv \
-regress_motion_per_run -regress_make_ideal_sum sum_ideal.1D \
-regress_est_blur_epits -regress_est_blur_errts -regress_run_clustsim no
Subject Author Posted

Error in affine step

tamtam August 07, 2018 05:01PM

Re: Error in affine step

Peter Molfese August 07, 2018 05:17PM

Re: Error in affine step Attachments

tamtam August 08, 2018 08:31AM

Re: Error in affine step

rick reynolds August 09, 2018 09:20AM

Re: Error in affine step

tamtam August 29, 2018 02:06PM

Re: Error in affine step

ptaylor August 29, 2018 02:21PM

Re: Error in affine step

tamtam August 29, 2018 02:44PM

Re: Error in affine step

ptaylor August 29, 2018 03:02PM

Re: Error in affine step

tamtam August 29, 2018 03:56PM

Re: Error in affine step

ptaylor August 29, 2018 04:42PM

Re: Error in affine step

tamtam August 30, 2018 10:01AM

Re: Error in affine step

ptaylor August 30, 2018 10:50AM

Re: Error in affine step

tamtam August 31, 2018 08:26AM