Hello!
I've just recently discovered what ICC is and 3dLME, so forgive my ignorance. I am trying to compute test-retest reliability for 3 runs of resting state. The file I input is a whole brain correlation map from a seed in the left inferior frontal gyrus. I am struggling to understand the output of the command. It seems that the only output is a 3D dataset and I'm not sure how to interpret the results in the GUI. Also, is there a way to add an option to quantify values in a text file or something? Thanks so much!! Here's my code:
3dLME -prefix test_ICC \
-jobs 12 \
-model "1" \
-ranEff 'Cond+Subj' \
-ICC \
-dataTable \
Subj Cond InputFile \
p1 EO1 p1_left_IFG_rest_run1_Tcorr+tlrc \
p1 EC2 p1_left_IFG_rest_run2_Tcorr+tlrc \
p1 EC3 p1_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc \
p96 EO1 p96_left_IFG_rest_run1_Tcorr+tlrc \
p96 EC2 p96_left_IFG_rest_run2_Tcorr+tlrc \
p96 EC3 p96_left_IFG_rest_run3_eyes_closed_Tcorr+tlrc
