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January 24, 2019 12:09PM
An easy way to get a listing of all ROIs across all of the atlases that you have loaded is:

whereami -show_atlas_code

Hypothalamus isn't that common in the atlases that I usually look through, but you could take the TT version and transform it using either 3dWarp's -tta2mni option or by creating a transform (preferably with either auto_warp.py or 3dQwarp) and apply that tranform to move your region of interest from one space to another.
Subject Author Posted

whereami: make MNI ROI

Robin January 24, 2019 10:52AM

Re: whereami: make MNI ROI

Peter Molfese January 24, 2019 12:09PM

Re: whereami: make MNI ROI

Daniel Glen January 24, 2019 06:24PM

Re: whereami: make MNI ROI

Emmanuelle Renauld February 01, 2019 11:06AM

Re: whereami: make MNI ROI

Daniel Glen February 01, 2019 02:18PM

Re: whereami: make MNI ROI

lhopkins February 02, 2019 08:59PM

Re: whereami: make MNI ROI

Daniel Glen February 03, 2019 09:05PM

Re: whereami: make MNI ROI

lhopkins February 04, 2019 07:55PM

Re: whereami: make MNI ROI

Daniel Glen February 04, 2019 11:11PM



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