AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 01, 2019 11:06AM
I am the same problem.

Can you explain better the whereami function?

When I ask: whereami -show_available_spaces TLRC, the answer is:
++ ----- List of available spaces: -------
++ TT_N27
++ TT_avg
++ MNI
++ MNI_ANAT
++ MNIa
++ MNI_SPM2
++ MNI_FSL
++ MNI_OTHER
++ HaskinsPeds

However, if I try:
whereami -mask_atlas_region TT_Daemon:right:putamen -prefix Putamen_right -space MNI

There is an error:
++ Input coordinates orientation set by default rules to RAI
Best match for putamen:
Right Putamen (code 151)

** ERROR: Atlas does not match space requested.


What is wrong?


Thanks!
Subject Author Posted

whereami: make MNI ROI

Robin January 24, 2019 10:52AM

Re: whereami: make MNI ROI

Peter Molfese January 24, 2019 12:09PM

Re: whereami: make MNI ROI

Daniel Glen January 24, 2019 06:24PM

Re: whereami: make MNI ROI

Emmanuelle Renauld February 01, 2019 11:06AM

Re: whereami: make MNI ROI

Daniel Glen February 01, 2019 02:18PM

Re: whereami: make MNI ROI

lhopkins February 02, 2019 08:59PM

Re: whereami: make MNI ROI

Daniel Glen February 03, 2019 09:05PM

Re: whereami: make MNI ROI

lhopkins February 04, 2019 07:55PM

Re: whereami: make MNI ROI

Daniel Glen February 04, 2019 11:11PM