I am the same problem.
Can you explain better the whereami function?
When I ask: whereami -show_available_spaces TLRC, the answer is:
++ ----- List of available spaces: -------
++ TT_N27
++ TT_avg
++ MNI
++ MNI_ANAT
++ MNIa
++ MNI_SPM2
++ MNI_FSL
++ MNI_OTHER
++ HaskinsPeds
However, if I try:
whereami -mask_atlas_region TT_Daemon:right:putamen -prefix Putamen_right -space MNI
There is an error:
++ Input coordinates orientation set by default rules to RAI
Best match for putamen:
Right Putamen (code 151)
** ERROR: Atlas does not match space requested.
What is wrong?
Thanks!
