History of AFNI updates  

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January 30, 2019 11:25AM
Hi Christine,

Since you want to apply '2..$' in 3dToutcount, rather than removing 2 time points and you and Cesar noted, I will assume there are stimulus events at the beginning of the run that you do not want to manage after they get chopped off, or something similar.

The difficulty with applying '2..$' for computation of MIN_OUTLIERS (or for censoring), is that the results will be 2 time points (per run) off from the rest of the script. So the MIN_OUTLIER would not actually be correct, nor would the outlier censoring, if applied.

There would be much more to adjust in the proc script to account for missing those time points.

Are you trying to preserve early stim events?
Is there another reason you are trying this?

- rick
Subject Author Posted

MIN_OUTLIER ignore option

Christine Smith January 29, 2019 06:55PM

Re: MIN_OUTLIER ignore option

Cesar Caballero Gaudes January 30, 2019 01:45AM

Re: MIN_OUTLIER ignore option

rick reynolds January 30, 2019 11:25AM