AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 01, 2019 12:11PM
Hi-

Okay, you can check out this thread for explicit instructions on how to update your R to 3.5.3 on Ubuntu 18.04 here:
[afni.nimh.nih.gov]

Well, I guess I can repost the instructions here so they are in a single post:

Remove your current R:
sudo apt-get remove r-base-core

Add the following line to the bottom of your /etc/apt/sources.list file *but also remove the underscores "_" as you do*:
deb h_t_t_p_s_:_/_/cloud.r-project.org/bin/linux/ubuntu bionic-cran35
(I had to add the underscores for the forum post, just so it wouldn't be tranlated to an abbreviated link). To open that file so that it is editable, you need to use sudo when calling your text editor; so, something like: "sudo gedit /etc/apt/sources.list" to open the file, then copy+paste that line, then remove the underscores; save+close that text file.

After that, run:
sudo apt-get update
so that the package manager can see the changes.

Then run:
sudo apt-get install -y r-base-dev
to install R, which should be some v3.5.* now.

Then, run this to try to reinstall necessary packages.
rPkgsInstall -pkgs ALL
Subject Author Posted

AFNI R packages installation issue

dmomi April 01, 2019 07:34AM

Re: AFNI R packages installation issue

ptaylor April 01, 2019 09:54AM

Re: AFNI R packages installation issue

dmomi April 01, 2019 11:50AM

Re: AFNI R packages installation issue

ptaylor April 01, 2019 12:11PM

Re: AFNI R packages installation issue

dmomi April 01, 2019 12:38PM

Re: AFNI R packages installation issue

ptaylor April 01, 2019 12:59PM

Re: AFNI R packages installation issue

dmomi April 01, 2019 01:04PM

Re: AFNI R packages installation issue

ptaylor April 01, 2019 01:12PM

Re: AFNI R packages installation issue

dmomi April 01, 2019 01:21PM

Re: AFNI R packages installation issue

ptaylor April 01, 2019 01:33PM

Re: AFNI R packages installation issue

ptaylor April 23, 2019 05:48PM

Re: AFNI R packages installation issue

dmomi April 29, 2019 03:50AM