Paul,
please find attached the output
-------------------------------- general ---------------------------------
architecture: 64bit
system: Linux
release: 4.15.0-46-generic
version: #49-Ubuntu SMP Wed Feb 6 09:33:07 UTC 2019
distribution: debian buster/sid
number of CPUs: 24
apparent login shell: bash
shell RC file: .bashrc (exists)
--------------------- AFNI and related program tests ---------------------
which afni : /home/davide/abin/afni
afni version : Precompiled binary linux_ubuntu_16_64: Mar 20 2019
: AFNI_19.0.26 'Tiberius'
AFNI_version.txt : AFNI_19.0.26, linux_ubuntu_16_64, Mar 20 2019
which python : /home/davide/anaconda3/bin/python
python version : 3.7.1
which R : /usr/bin/R
R version : R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
which tcsh : /usr/bin/tcsh
instances of various programs found in PATH:
afni : 1 (/home/davide/abin/afni)
R : 1 (/usr/bin/R)
python : 2
/home/davide/anaconda3/bin/python3.7
/usr/bin/python2.7
python2 : 1 (/usr/bin/python2.7)
python3 : 2
/home/davide/anaconda3/bin/python3.7
/usr/bin/python3.6
testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : success
3dClustSim : success
checking for R packages...
rPkgsInstall -pkgs ALL -check : FAILURE
oo Warning:
These packages are not installed on the computer: brms!
checking for $HOME files...
.afnirc : found
.sumarc : found
.afni/help/all_progs.COMP : found
------------------------------ python libs -------------------------------
** python module not found: PyQt4
-- PyQt4 is no longer needed for an AFNI bootcamp
-------------------------------- env vars --------------------------------
PATH = /home/davide/anaconda3/bin:/usr/lib/afni/bin:/usr/local/fsl/bin:/usr/local/MATLAB/R2017a/bin:/home/davide/mrtrix3/bin:/usr/local/freesurfer/bin:/usr/local/freesurfer/fsfast/bin:/usr/local/freesurfer/tktools:/usr/local/fsl/bin:/usr/local/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/davide/abin:/home/davide/abin
PYTHONPATH =
R_LIBS = /home/davide/R
LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =
------------------------------ data checks -------------------------------
data dir : missing AFNI_data6
data dir : missing AFNI_demos
data dir : missing suma_demo
data dir : missing afni_handouts
atlas : found TT_N27+tlrc under /home/davide/abin
------------------------------ OS specific -------------------------------
which apt-get : /usr/bin/apt-get
apt-get version : apt 1.6.10 (amd64)
========================= summary, please fix: =========================
* login shell 'bash', trusting user to translate code examples from 'tcsh'
* have python version 3.7.1, some programs need 2.7.x
* missing R packages (see rPkgsInstall)
* insufficient data for AFNI bootcamp
* consider running: apt-get install python-qt4
