AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 02, 2019 01:12AM
Hi Peter,

I carefully checked the results, but the mask file is still far away from the anatomical image. Please see pictures attached for details. Underlay shows the anatomical image in native space, and Overlay shows the atlas file given by the script that I posted in my last message. The shape looks okay, but I am not sure why it is superior to the anatomical image. All terminal output of auto_warp.py and 3dNwarpApply are posted in my last message.

Qiuhai
Attachments:
open | download - 2.jpg (8.9 KB)
open | download - 3.jpg (8.5 KB)
Subject Author Posted

Re: Nonlinear transform EPI data

qiuhai April 01, 2019 02:56PM

Re: Nonlinear transform EPI data

Peter Molfese April 01, 2019 03:51PM

Re: Nonlinear transform EPI data

qiuhai April 01, 2019 04:45PM

Re: Nonlinear transform EPI data Attachments

qiuhai April 02, 2019 01:12AM

Re: Nonlinear transform EPI data

qiuhai April 02, 2019 12:17PM

Re: Nonlinear transform EPI data

Peter Molfese April 02, 2019 12:25PM

Re: Nonlinear transform EPI data

qiuhai April 02, 2019 03:33PM

Re: Nonlinear transform EPI data

Peter Molfese April 03, 2019 10:23AM