afni.nimh.nih.gov

Hi Peter,

I carefully checked the results, but the mask file is still far away from the anatomical image. Please see pictures attached for details. Underlay shows the anatomical image in native space, and Overlay shows the atlas file given by the script that I posted in my last message. The shape looks okay, but I am not sure why it is superior to the anatomical image. All terminal output of auto_warp.py and 3dNwarpApply are posted in my last message.

Qiuhai