Hi Paul,
Yes, I have already cleaned the time series data with 3dTProject (without band-pass filtering, but with default polort) before 3dRSFC.
Just to be clear then, after I get the cleaned time series with 3dTProject, I can simply run the command
3dRSFC -prefix RSFC 0.01 0.1 -input cleaned_data.nii.gz -nodetrend
and that will appropriately compute the parameters, is that correct?
Best regards,
Sam
