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Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Catherine Tallman
January 30, 2020 02:03PM
Hi Gang,

Thank you so much for the help - I really appreciate it.

I am currently receiving the following error:
Error in `[.data.frame`(dataStr, , vars[ii]) : undefined columns selected
Calls: process.LME.opts ... gl_Constr -> glfConstr -> levels -> [ -> [.data.frame
Execution halted

This is the version of afni I am using: Precompiled binary linux_ubuntu_16_64: Sep 13 2019 (Version AFNI_19.2.24 'Claudius')

Here is the command ***EDIT***: I also tried the command with the indices in the datatable surrounded by quotes ("[100]")
3dLME \
-prefix Dprime_coi \
-model 'Dprime' \
-ranEff '~1+Dprime' \
-qVars 'Dprime' \
-num_glt 3 \
-gltLabel 1 'MvH' -gltCode 1 'Cond: 1*month -1*hour' \
-gltLabel 2 'MWvDH' -gltCode 2 'Cond: 1*month 1*week -1*hour -1*day' \
-gltLabel 3 'avg_cond' -gltCode 3 'Cond: 1*month +1*hour +1*week +1*day' \
-dataTable \
Subj Cond Dprime InputFile \
SS01 hour 2.283607767 decon_alltime_REML/SS01_decon_results_all_targets_REML+orig[100] \
SS02 hour 2.283607767 decon_alltime_REML/SS02_decon_results_all_targets_REML+orig[100] \
SS04 hour 2.283607767 decon_alltime_REML/SS04_decon_results_all_targets_REML+orig[100] \
SS06 hour 2.283607767 decon_alltime_REML/SS06_decon_results_all_targets_REML+orig[100] \
SS07 hour 2.283607767 decon_alltime_REML/SS07_decon_results_all_targets_REML+orig[100] \
SS08 hour 2.283607767 decon_alltime_REML/SS08_decon_results_all_targets_REML+orig[100] \
SS09 hour 2.283607767 decon_alltime_REML/SS09_decon_results_all_targets_REML+orig[100] \
SS10 hour 2.283607767 decon_alltime_REML/SS10_decon_results_all_targets_REML+orig[100] \
SS11 hour 2.283607767 decon_alltime_REML/SS11_decon_results_all_targets_REML+orig[100] \
SS12 hour 2.283607767 decon_alltime_REML/SS12_decon_results_all_targets_REML+orig[100] \
SS13 hour 2.283607767 decon_alltime_REML/SS13_decon_results_all_targets_REML+orig[100] \
SS14 hour 2.283607767 decon_alltime_REML/SS14_decon_results_all_targets_REML+orig[100] \
SS15 hour 2.283607767 decon_alltime_REML/SS15_decon_results_all_targets_REML+orig[100] \
SS16 hour 2.283607767 decon_alltime_REML/SS16_decon_results_all_targets_REML+orig[100] \
SS17 hour 2.283607767 decon_alltime_REML/SS17_decon_results_all_targets_REML+orig[100] \
SS18 hour 2.283607767 decon_alltime_REML/SS18_decon_results_all_targets_REML+orig[100] \
SS19 hour 2.283607767 decon_alltime_REML/SS19_decon_results_all_targets_REML+orig[100] \
SS20 hour 2.283607767 decon_alltime_REML/SS20_decon_results_all_targets_REML+orig[100] \
SS21 hour 2.283607767 decon_alltime_REML/SS21_decon_results_all_targets_REML+orig[100] \
SS22 hour 2.283607767 decon_alltime_REML/SS22_decon_results_all_targets_REML+orig[100] \
SS23 hour 2.283607767 decon_alltime_REML/SS23_decon_results_all_targets_REML+orig[100] \
SS01 day 2.010995168 decon_alltime_REML/SS01_decon_results_all_targets_REML+orig[103] \
SS02 day 2.010995168 decon_alltime_REML/SS02_decon_results_all_targets_REML+orig[103] \
SS04 day 2.010995168 decon_alltime_REML/SS04_decon_results_all_targets_REML+orig[103] \
SS06 day 2.010995168 decon_alltime_REML/SS06_decon_results_all_targets_REML+orig[103] \
SS07 day 2.010995168 decon_alltime_REML/SS07_decon_results_all_targets_REML+orig[103] \
SS08 day 2.010995168 decon_alltime_REML/SS08_decon_results_all_targets_REML+orig[103] \
SS09 day 2.010995168 decon_alltime_REML/SS09_decon_results_all_targets_REML+orig[103] \
SS10 day 2.010995168 decon_alltime_REML/SS10_decon_results_all_targets_REML+orig[103] \
SS11 day 2.010995168 decon_alltime_REML/SS11_decon_results_all_targets_REML+orig[103] \
SS12 day 2.010995168 decon_alltime_REML/SS12_decon_results_all_targets_REML+orig[103] \
SS13 day 2.010995168 decon_alltime_REML/SS13_decon_results_all_targets_REML+orig[103] \
SS14 day 2.010995168 decon_alltime_REML/SS14_decon_results_all_targets_REML+orig[103] \
SS15 day 2.010995168 decon_alltime_REML/SS15_decon_results_all_targets_REML+orig[103] \
SS16 day 2.010995168 decon_alltime_REML/SS16_decon_results_all_targets_REML+orig[103] \
SS17 day 2.010995168 decon_alltime_REML/SS17_decon_results_all_targets_REML+orig[103] \
SS18 day 2.010995168 decon_alltime_REML/SS18_decon_results_all_targets_REML+orig[103] \
SS19 day 2.010995168 decon_alltime_REML/SS19_decon_results_all_targets_REML+orig[103] \
SS20 day 2.010995168 decon_alltime_REML/SS20_decon_results_all_targets_REML+orig[103] \
SS21 day 2.010995168 decon_alltime_REML/SS21_decon_results_all_targets_REML+orig[103] \
SS22 day 2.010995168 decon_alltime_REML/SS22_decon_results_all_targets_REML+orig[103] \
SS23 day 2.010995168 decon_alltime_REML/SS23_decon_results_all_targets_REML+orig[103] \
SS01 week 1.149194158 decon_alltime_REML/SS01_decon_results_all_targets_REML+orig[106] \
SS02 week 1.477045692 decon_alltime_REML/SS02_decon_results_all_targets_REML+orig[106] \
SS04 week 1.477045692 decon_alltime_REML/SS04_decon_results_all_targets_REML+orig[106] \
SS06 week 1.477045692 decon_alltime_REML/SS06_decon_results_all_targets_REML+orig[106] \
SS07 week 1.477045692 decon_alltime_REML/SS07_decon_results_all_targets_REML+orig[106] \
SS08 week 1.477045692 decon_alltime_REML/SS08_decon_results_all_targets_REML+orig[106] \
SS09 week 1.477045692 decon_alltime_REML/SS09_decon_results_all_targets_REML+orig[106] \
SS10 week 1.477045692 decon_alltime_REML/SS10_decon_results_all_targets_REML+orig[106] \
SS11 week 1.477045692 decon_alltime_REML/SS11_decon_results_all_targets_REML+orig[106] \
SS12 week 1.477045692 decon_alltime_REML/SS12_decon_results_all_targets_REML+orig[106] \
SS13 week 1.477045692 decon_alltime_REML/SS13_decon_results_all_targets_REML+orig[106] \
SS14 week 1.477045692 decon_alltime_REML/SS14_decon_results_all_targets_REML+orig[106] \
SS15 week 1.477045692 decon_alltime_REML/SS15_decon_results_all_targets_REML+orig[106] \
SS16 week 1.477045692 decon_alltime_REML/SS16_decon_results_all_targets_REML+orig[106] \
SS17 week 1.477045692 decon_alltime_REML/SS17_decon_results_all_targets_REML+orig[106] \
SS18 week 1.477045692 decon_alltime_REML/SS18_decon_results_all_targets_REML+orig[106] \
SS19 week 1.477045692 decon_alltime_REML/SS19_decon_results_all_targets_REML+orig[106] \
SS20 week 1.477045692 decon_alltime_REML/SS20_decon_results_all_targets_REML+orig[106] \
SS21 week 1.477045692 decon_alltime_REML/SS21_decon_results_all_targets_REML+orig[106] \
SS22 week 1.477045692 decon_alltime_REML/SS22_decon_results_all_targets_REML+orig[106] \
SS23 week 1.477045692 decon_alltime_REML/SS23_decon_results_all_targets_REML+orig[106] \
SS01 month 1.149194158 decon_alltime_REML/SS01_decon_results_all_targets_REML+orig[109] \
SS02 month 1.149194158 decon_alltime_REML/SS02_decon_results_all_targets_REML+orig[109] \
SS04 month 1.149194158 decon_alltime_REML/SS04_decon_results_all_targets_REML+orig[109] \
SS06 month 1.149194158 decon_alltime_REML/SS06_decon_results_all_targets_REML+orig[109] \
SS07 month 1.149194158 decon_alltime_REML/SS07_decon_results_all_targets_REML+orig[109] \
SS08 month 1.149194158 decon_alltime_REML/SS08_decon_results_all_targets_REML+orig[109] \
SS09 month 1.149194158 decon_alltime_REML/SS09_decon_results_all_targets_REML+orig[109] \
SS10 month 1.149194158 decon_alltime_REML/SS10_decon_results_all_targets_REML+orig[109] \
SS11 month 1.149194158 decon_alltime_REML/SS11_decon_results_all_targets_REML+orig[109] \
SS12 month 1.149194158 decon_alltime_REML/SS12_decon_results_all_targets_REML+orig[109] \
SS13 month 1.149194158 decon_alltime_REML/SS13_decon_results_all_targets_REML+orig[109] \
SS14 month 1.149194158 decon_alltime_REML/SS14_decon_results_all_targets_REML+orig[109] \
SS15 month 1.149194158 decon_alltime_REML/SS15_decon_results_all_targets_REML+orig[109] \
SS16 month 1.149194158 decon_alltime_REML/SS16_decon_results_all_targets_REML+orig[109] \
SS17 month 1.149194158 decon_alltime_REML/SS17_decon_results_all_targets_REML+orig[109] \
SS18 month 1.149194158 decon_alltime_REML/SS18_decon_results_all_targets_REML+orig[109] \
SS19 month 1.149194158 decon_alltime_REML/SS19_decon_results_all_targets_REML+orig[109] \
SS20 month 1.149194158 decon_alltime_REML/SS20_decon_results_all_targets_REML+orig[109] \
SS21 month 1.149194158 decon_alltime_REML/SS21_decon_results_all_targets_REML+orig[109] \
SS22 month 1.149194158 decon_alltime_REML/SS22_decon_results_all_targets_REML+orig[109] \
SS23 month 1.149194158 decon_alltime_REML/SS23_decon_results_all_targets_REML+orig[109]



Edited 3 time(s). Last edit at 01/30/2020 02:41PM by Catherine Tallman.
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Subject Author Posted

Regression covariate question

Catherine Tallman January 21, 2020 08:41PM

Re: Regression covariate question

gang January 22, 2020 02:11PM

Re: Regression covariate question

Catherine Tallman January 22, 2020 02:35PM

Re: Regression covariate question

gang January 22, 2020 03:26PM

Re: Regression covariate question

Catherine Tallman January 23, 2020 05:26PM

Re: Regression covariate question

gang January 24, 2020 10:20AM

Re: Regression covariate question

Catherine Tallman January 27, 2020 02:00PM

Re: Regression covariate question

gang January 27, 2020 04:32PM

Re: Regression covariate question

Catherine Tallman January 30, 2020 02:03PM

Re: Regression covariate question

gang January 31, 2020 04:36PM