History of AFNI updates  

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February 21, 2020 08:57AM
Thanks!

That's all I wanted to hear :). We have tried to dabble with ETAC but found it still to be very conservative. But that was in the early days, perhaps time to give it a new go! =)


Something I noticed as a bonus:
Not sure this was from @SSwarper of afniproc since my script is running them in sequence but one of those processes created temp-files in the directory where I run my main bash-script (which makes me believe it's the @SSwarper since afni-proc cd's into the .results folder):

__eac_tmp_0_cp.nii __eac_tmp_1_ulay_shrp.nii __eac_tmp_2_res.nii __eac_tmp_3_mask.nii __eac_tmp_4_mfilt.nii __eac_tmp_5_edgy.nii __eac_tmp_6_edge_mskd.nii

Running subjects in parallel on the same machine or from another server in the same network mount could (with very unlucky timing since they are short-lived) cause a collision of file names (since they don't seem to have a unique identifier) and perhaps result in fatal error or read the wrong files. Unless your @SSwarper is super smart and checks for files prior to generating them. I just wanted to flag this since with this new recommended approach I guess more people will make scripts like mine (@SSwarper in sequence with afniproc) and I would guess we are not the only ones with more than one analysis machine with access to the same network home directory.



Edited 1 time(s). Last edit at 02/21/2020 09:00AM by Robin.
Subject Author Posted

Updated AFNI pre-proc pipeline

Robin February 21, 2020 06:51AM

Re: Updated AFNI pre-proc pipeline

ptaylor February 21, 2020 07:17AM

Re: Updated AFNI pre-proc pipeline

Robin February 21, 2020 08:23AM

Re: Updated AFNI pre-proc pipeline

ptaylor February 21, 2020 08:42AM

Re: Updated AFNI pre-proc pipeline

Robin February 21, 2020 08:57AM

Re: Updated AFNI pre-proc pipeline

Robin February 21, 2020 09:24AM

Re: Updated AFNI pre-proc pipeline

ptaylor February 21, 2020 09:35AM

Re: Updated AFNI pre-proc pipeline Attachments

Robin February 24, 2020 04:53AM

Re: Updated AFNI pre-proc pipeline

ptaylor February 24, 2020 07:43AM

Re: Updated AFNI pre-proc pipeline

Robin February 24, 2020 07:59AM

Re: Updated AFNI pre-proc pipeline

Robin March 02, 2020 03:02AM

Re: Updated AFNI pre-proc pipeline

rick reynolds March 03, 2020 09:51AM

Re: Updated AFNI pre-proc pipeline

Robin March 03, 2020 04:15PM

Re: Updated AFNI pre-proc pipeline

krisknut March 11, 2020 02:35PM

Re: Updated AFNI pre-proc pipeline

rick reynolds March 11, 2020 04:35PM