AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 21, 2020 08:57AM
Thanks!

That's all I wanted to hear :). We have tried to dabble with ETAC but found it still to be very conservative. But that was in the early days, perhaps time to give it a new go! =)


Something I noticed as a bonus:
Not sure this was from @SSwarper of afniproc since my script is running them in sequence but one of those processes created temp-files in the directory where I run my main bash-script (which makes me believe it's the @SSwarper since afni-proc cd's into the .results folder):

__eac_tmp_0_cp.nii __eac_tmp_1_ulay_shrp.nii __eac_tmp_2_res.nii __eac_tmp_3_mask.nii __eac_tmp_4_mfilt.nii __eac_tmp_5_edgy.nii __eac_tmp_6_edge_mskd.nii

Running subjects in parallel on the same machine or from another server in the same network mount could (with very unlucky timing since they are short-lived) cause a collision of file names (since they don't seem to have a unique identifier) and perhaps result in fatal error or read the wrong files. Unless your @SSwarper is super smart and checks for files prior to generating them. I just wanted to flag this since with this new recommended approach I guess more people will make scripts like mine (@SSwarper in sequence with afniproc) and I would guess we are not the only ones with more than one analysis machine with access to the same network home directory.



Edited 1 time(s). Last edit at 02/21/2020 09:00AM by Robin.
Subject Author Posted

Updated AFNI pre-proc pipeline

Robin February 21, 2020 06:51AM

Re: Updated AFNI pre-proc pipeline

ptaylor February 21, 2020 07:17AM

Re: Updated AFNI pre-proc pipeline

Robin February 21, 2020 08:23AM

Re: Updated AFNI pre-proc pipeline

ptaylor February 21, 2020 08:42AM

Re: Updated AFNI pre-proc pipeline

Robin February 21, 2020 08:57AM

Re: Updated AFNI pre-proc pipeline

Robin February 21, 2020 09:24AM

Re: Updated AFNI pre-proc pipeline

ptaylor February 21, 2020 09:35AM

Re: Updated AFNI pre-proc pipeline Attachments

Robin February 24, 2020 04:53AM

Re: Updated AFNI pre-proc pipeline

ptaylor February 24, 2020 07:43AM

Re: Updated AFNI pre-proc pipeline

Robin February 24, 2020 07:59AM

Re: Updated AFNI pre-proc pipeline

Robin March 02, 2020 03:02AM

Re: Updated AFNI pre-proc pipeline

rick reynolds March 03, 2020 09:51AM

Re: Updated AFNI pre-proc pipeline

Robin March 03, 2020 04:15PM

Re: Updated AFNI pre-proc pipeline

krisknut March 11, 2020 02:35PM

Re: Updated AFNI pre-proc pipeline

rick reynolds March 11, 2020 04:35PM