Hi Paul,
>>>>>I am confused-- what does "as anatomy files" mean? I am afraid I don't understand what this means. And how is this "verified" with 3dinfo?
Sorry that was confusing. This is what 3dinfo says:
Dataset File: ./reward_pos_vs_neg_feedback_subcortical_vox_tstat_uncparap_c1.nii
Identifier Code: NII_FyQ-kpj_FPGUqCi_ZKDy5g Creation Date: Wed Mar 25 19:24:36 2020
Template Space: TLRC
Dataset Type: Anat Bucket (-abuc)
Byte Order: LSB_FIRST {assumed} [this CPU native = LSB_FIRST]
Storage Mode: NIFTI
>>>>>> Is it correct that you have volumetric (NIFTI) datasets that you are concatenating, and then wanting to overlay in the GUI?
Yes, that is correct. PALM outputs separate files for the t map and coef so I used 3dTcat to merge the files together. Perhaps that was not correct?
>>>>>>>>What are you selecting as your olay and thr bricks for viewing?
Overlay: Coef
Thrs: tmap
>>>>>> Note that you might not be able to use the nice automatic conversion of stat-to-p for thresholding because I don't think PALM or non-AFNI software will store the degree of freedom information in the header for the stat subbrick.
Very true. Okay, I'd prefer to use AFNI so I guess I'll just have to figure out how to display results on the surface in AFNI-land.
Thanks for responding so quickly!
So, under dataset type: anat bucket rather than functional.
In the GUI, these files say abuc:2 (for the coef and tstat).
