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April 04, 2020 09:15AM
Hi,

I'm trying to warp my functional dataset to standard space.

The code I'm running is:
@auto_tlrc -base MNI152_T1_2009c+tlrc -suffix _tl -input {$subj}_2_t1+orig
@auto_tlrc -apar {$subj}_2_t1_tl+tlrc -suffix _tl -input {$subj}_vwfa_beta+orig -dxyz 1.5

But I got the following error message:
Applying tlrc warp from ./C01_2_t1_tl+tlrc to C01_vwfa_beta+orig ...
Padding the input data before warping
++ 3dZeropad: AFNI version=AFNI_20.0.23 (Mar 27 2020) [64-bit]
++ output dataset: ./__ats_tmp__ipad+orig.BRIK
Creating grid at (1.5 1.5 1.5)mm RAI resolution...

*** failure while reading from brick file ./C01_2_t1_tl+tlrc.BRIK
*** desired 17060042 bytes but only got 1805258
*** Unix error message: Undefined error: 0
THD_load_datablock
AFNI_dataset_slice
3dresample
** Command line was:
3dresample -master C01_2_t1_tl+tlrc -dxyz 1.5 1.5 1.5 -prefix ./__ats_tmp__warp_grid -inset C01_2_t1_tl+tlrc -rmode Linear

*** failure while reading from brick file ./C01_2_t1_tl+tlrc.BRIK
*** desired 17060042 bytes but only got 1805258
*** Unix error message: Undefined error: 0
THD_load_datablock
AFNI_dataset_slice
3dresample
** Command line was:
3dresample -master C01_2_t1_tl+tlrc -dxyz 1.5 1.5 1.5 -prefix ./__ats_tmp__warp_grid -inset C01_2_t1_tl+tlrc -rmode Linear
r_fill_resampled_data_brick: failure to compute dataset slice 0
failure to resample dataset, exiting...
Failed to resample

I would really appreciate any suggestions you have! Thank you!
-Joy
Subject Author Posted

problems with warping functional dataset to standard space

joy0617 April 04, 2020 09:15AM

Re: problems with warping functional dataset to standard space

ptaylor April 04, 2020 10:00AM

Re: problems with warping functional dataset to standard space

joy0617 April 04, 2020 12:57PM

Re: problems with warping functional dataset to standard space

joy0617 April 04, 2020 08:01PM

Re: problems with warping functional dataset to standard space

joy0617 April 05, 2020 12:40PM

Re: problems with warping functional dataset to standard space

ptaylor April 05, 2020 09:41PM

Re: problems with warping functional dataset to standard space

joy0617 April 06, 2020 05:00PM

Re: problems with warping functional dataset to standard space

ptaylor April 07, 2020 10:18AM

Re: problems with warping functional dataset to standard space

abdollahis2 January 15, 2021 10:45AM