AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 10, 2020 11:44PM
Hi again,

I've tried -uniformize and -anat_has_skull in case any of these could help with the "could not strip skull" error, but it didn't work.

I understand that the problem could be that the EPI I'm using is the output from the resting state uber_subject. What I don't understand is why this error only happens in half of the subjects.
Any thoughts?
Thanks!
Subject Author Posted

afni_restproc.py (ERROR: Could not strip skull)

Ana Navarro Cebrian June 10, 2020 01:49PM

Re: afni_restproc.py (ERROR: Could not strip skull)

Ana Navarro Cebrian June 10, 2020 11:44PM

Re: afni_restproc.py (ERROR: Could not strip skull)

ptaylor June 11, 2020 09:16AM

Re: afni_restproc.py (ERROR: Could not strip skull)

Ana Navarro Cebrian June 11, 2020 09:28AM

Re: afni_restproc.py (ERROR: Could not strip skull)

ptaylor June 11, 2020 09:57AM

Re: afni_restproc.py (ERROR: Could not strip skull)

Ana Navarro Cebrian June 11, 2020 01:06PM

Re: afni_restproc.py (ERROR: Could not strip skull)

rick reynolds June 22, 2020 11:00AM

Re: afni_restproc.py (ERROR: Could not strip skull)

Ana Navarro Cebrian June 22, 2020 05:53PM

Re: afni_restproc.py (ERROR: Could not strip skull)

rick reynolds June 22, 2020 06:59PM