AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

Previous Message Next Message
Message List New Topic Print View
|
Ana Navarro Cebrian
June 10, 2020 01:49PM
Hi all,

I have resting state data from a group of subjects for whom I run uber_subject.py. Now I'm running afni_restproc.py, using the file errts.sub.tproject+tlrc. that results from uber_subject.py.
The script works for many of my subjects (the majority of them), but there is a problem with some subjects that I don't know how to interpret. Here's the first error message that appears:
** ERROR: Could not strip skull

** ERROR - script failed
INFO: Remove first TRs from EPI, motion params, and any user supplied regressors
++ 3dTcat: AFNI version=AFNI_19.2.26 (Sep 24 2019) [64-bit]
++ elapsed time = 12.0 s
INFO: Extract brain mask
++ 3dAutomask: AFNI version=AFNI_19.2.26 (Sep 24 2019) [64-bit]
++ Authored by: Emperor Zhark
** FATAL ERROR: Can't open dataset 'anat_w_skull_warped_al+tlrc'


Does anybody know what the problem could be? Thanks,
Ana
Reply Quote
RSS
Subject Author Posted

afni_restproc.py (ERROR: Could not strip skull)

Ana Navarro Cebrian June 10, 2020 01:49PM

Re: afni_restproc.py (ERROR: Could not strip skull)

Ana Navarro Cebrian June 10, 2020 11:44PM

Re: afni_restproc.py (ERROR: Could not strip skull)

ptaylor June 11, 2020 09:16AM

Re: afni_restproc.py (ERROR: Could not strip skull)

Ana Navarro Cebrian June 11, 2020 09:28AM

Re: afni_restproc.py (ERROR: Could not strip skull)

ptaylor June 11, 2020 09:57AM

Re: afni_restproc.py (ERROR: Could not strip skull)

Ana Navarro Cebrian June 11, 2020 01:06PM

Re: afni_restproc.py (ERROR: Could not strip skull)

rick reynolds June 22, 2020 11:00AM

Re: afni_restproc.py (ERROR: Could not strip skull)

Ana Navarro Cebrian June 22, 2020 05:53PM

Re: afni_restproc.py (ERROR: Could not strip skull)

rick reynolds June 22, 2020 06:59PM