AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 11, 2020 09:28AM
Thanks a lot for the message!

Isn't afni_proc.py what's used by uber_subject.py?

I already processed this resting state data using uber_subject.py.
What I'm trying to do now is to regress out ventricles and WM. I was also trying to regress out the entire global signal for comparison.
Can I use ventricles and WM as regressors in afni_proc.py? I couldn't see any option in uber_subject.py and it seems quite straightforward in afni_restproc.py, using the aseg file from freesurfer. That's why I was using afni_restproc.py.
Subject Author Posted

afni_restproc.py (ERROR: Could not strip skull)

Ana Navarro Cebrian June 10, 2020 01:49PM

Re: afni_restproc.py (ERROR: Could not strip skull)

Ana Navarro Cebrian June 10, 2020 11:44PM

Re: afni_restproc.py (ERROR: Could not strip skull)

ptaylor June 11, 2020 09:16AM

Re: afni_restproc.py (ERROR: Could not strip skull)

Ana Navarro Cebrian June 11, 2020 09:28AM

Re: afni_restproc.py (ERROR: Could not strip skull)

ptaylor June 11, 2020 09:57AM

Re: afni_restproc.py (ERROR: Could not strip skull)

Ana Navarro Cebrian June 11, 2020 01:06PM

Re: afni_restproc.py (ERROR: Could not strip skull)

rick reynolds June 22, 2020 11:00AM

Re: afni_restproc.py (ERROR: Could not strip skull)

Ana Navarro Cebrian June 22, 2020 05:53PM

Re: afni_restproc.py (ERROR: Could not strip skull)

rick reynolds June 22, 2020 06:59PM