Hi,
I would like to check the alignment of data by looking at the APQC-HTML file, but it only contains three QC blocks: 'regr', 'warns', 'qsumm'. Blocks like 've2a' are missing. Since the same '-html_review_style pythonic' command worked well with the other fMRI dataset of mine, I don't know what's wrong with my code.
The afni_proc.py command I used is:
afni_proc.py \
-subj_id sub02 \
-script proc.sub02.r2 \
-out_dir sub02.r2.results \
-dsets S02_run2+orig.HEAD \
-copy_anat S02_t1_deob+orig \
-anat_has_skull yes \
-blocks despike tshift align volreg mask scale regress \
-tcat_remove_first_trs 0 \
-tshift_interp -Fourier \
-volreg_align_to MIN_OUTLIER \
-align_opts_aea \
-giant_move -cmass cmass \
-volreg_align_e2a \
-regress_stim_times 01.txt 02.txt 03.txt 04.txt 05.txt 06.txt 07.txt 08.txt 09.txt 10.txt 11.txt 12.txt 13.txt 14.txt 15.txt 16.txt 17.txt 18.txt 19.txt 20.txt 21.txt 22.txt 23.txt 24.txt 25.txt filler.txt \
-regress_local_times \
-regress_stim_labels 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 filler \
-regress_basis 'BLOCK(2,1)' \
-regress_censor_motion 0.3 \
-regress_censor_outliers 0.1 \
-regress_opts_3dD \
-jobs 4 \
-regress_run_clustsim no \
-regress_est_blur_errts \
-regress_est_blur_epits \
-html_review_style pythonic
Thanks a lot.
-Joy
