afni.nimh.nih.gov

Hi,

Thank you for your response!
I ran the command you suggested and the output was:
1.12356 0.00500563 0.0739877 6.93706 0.035566 1.07698 -0.170503 12.3146 -0.0403194 0.129099 1.12266 -6.46164

I have also been trying to warp step by step by aligning the center of my image (orig space) to the desired template (which is Allen CCF3 in tlrc space), and the *.1D file I get out of it cannot generate the same movement.

Momo