Hi,
I have a volumetric dataset made up of labeled regions within the rat brain (I've attached a picture here) and I am attempting to turn it into an afni atlas that I can access using the where am i tool in the GUI. I've tried using @atlasize and haven't been able to make available to use in the whereami tool. Here's my code:
@Atlasize
-dset ROIs.nii
-lab_file ROIs_list.txt 1 0
-atlas_type G
-atlas_name Rat
-atlas_description 'Rat_Atlas'
Where I run it, it appears to work. I get this message "Putting copy of atlas in /home/scarlatamj/CustomAtlases".
But then my whereami option is still inactive.
And here is a fragment of my ROI_list textfile so you can see what it looks like. I'm worried that the format of the list is the issue.
88 PIL
79 PAG
10 AIV
4 PrL
20 S1FL
89 RNC
11 Claustrum
5 M1
6 M2
21 S1DZ
30 S1BF
12 Peduncle
13 S1J
7 Cg1
22 S1DZO
31 AIP
40 Re, VRe
41 VH
14 CPu
8 IL
50 LDDM
23 S1UpL
32 fimbria, fornix
42 PH
15 GI
9 AID
Anything jumping out at you as something I've done wrong?
Thanks,
Miranda
