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February 26, 2021 11:55PM
Hi All.

I'm having some issues with 3dICC.

I'm attempting to run it to find voxel-wise ICC values across 30 preprocessing pipelines (using the mean images from each due to storage space constraints).

However, while the code itself seems to work, it dies just prior to running, only giving me a "Killed" notification in the window.

Am I doing something wrong on the inputs? Are there too many?

./3dICC_Run.sh

++++++++++++++++++++++++++++++++++++++++++++++++++++
***** Summary information of data structure *****
171 subjects : M68200328 M68201840 M68202519 M68203813 M68205852 M68206804 M68207441 M68211711 M68213150 M68214060 M68215067 M68216812 M68217540 M68218804 M68219746 M68220087 M68220143 M68222897 M68224600 M68226680 M68228101 M68228769 M68229766 M68230071 M68230076 M68230484 M68233626 M68234678 M68235743 M68238660 M68239883 M68240624 M68241316 M68241416 M68242003 M68243231 M68244666 M68245526 M68246778 M68247537 M68248669 M68248972 M68250477 M68250661 M68252083 M68252810 M68253176 M68254569 M68255787 M68258048 M68263120 M68263159 M68263512 M68266005 M68266503 M68267721 M68268383 M68272184 M68272978 M68273479 M68273917 M68274309 M68275220 M68279410 M68279458 M68279767 M68280629 M68281040 M68281658 M68282559 M68283766 M68284038 M68284343 M68284963 M68286912 M68290598 M68290751 M68291444 M68297719 M68298580 M87100718 M87100788 M87104289 M87104714 M87104918 M87105212 M87105265 M87105689 M87105897 M87106704 M87109225 M87109237 M87111261 M87111372 M87111670 M87112743 M87113328 M87113655 M87114683 M87116480 M87116559 M87116562 M87117365 M87120319 M87120532 M87122548 M87123871 M87124949 M87126689 M87126892 M87128044 M87130182 M87131012 M87132364 M87133564 M87133640 M87135262 M87137913 M87138931 M87139741 M87140340 M87141288 M87144657 M87145777 M87146442 M87147424 M87149105 M87152059 M87152436 M87152779 M87152840 M87154350 M87155237 M87155634 M87155705 M87160162 M87160343 M87160608 M87161334 M87161703 M87166199 M87168050 M87170742 M87170862 M87172564 M87173380 M87173481 M87174487 M87175951 M87177235 M87177451 M87177624 M87181301 M87181340 M87183741 M87184504 M87184673 M87184856 M87186620 M87186783 M87189143 M87189586 M87192301 M87193022 M87195745 M87196268 M87196316 M87196476 M87196579 M87197917 M87199117
5129 response values
30 levels for factor Method : Affine_MeanEPI_to_KIDSPMTPM_GM Affine_MeanEPI_to_Post_MNI_Averaged_Brain_Template Affine_MeanEPI_to_T1_to_KIDSPMTPM_GM Affine_MeanEPI_to_T1_to_Multimodal_Study_Specific_EPI_Template Affine_MeanEPI_to_T1_to_Post_MNI_Averaged_Brain_Template Affine_MeanEPI_to_T1_to_Unimodal_EPI_Study_Specific_Template Affine_MeanEPI_to_to_Multimodal_Study_Specific_EPI_Template Affine_MeanEPI_to_to_Multimodal_Study_Specific_T1_Template Affine_MeanEPI_to_Unimodal_Study_Specific_EPI_Template Affine_T1_to_KIDSPMTPM_GM Affine_T1_to_Multimodal_Study_Specific_T1_Template MeanEPI_to_MNI_Brain_Template Nonlinear_MeanEPI_to_KIDSPMTPM_GM Nonlinear_MeanEPI_to_Post_MNI_Averaged_Brain_Template Nonlinear_MeanEPI_to_T1_to_KIDSPMTPM_GM Nonlinear_MeanEPI_to_T1_to_Multimodal_Study_Specific_EPI_Template Nonlinear_MeanEPI_to_T1_to_Post_MNI_Averaged_Brain_Template Nonlinear_MeanEPI_to_T1_to_Unimodal_EPI_Study_Specific_Template Nonlinear_MeanEPI_to_to_Multimodal_Study_Specific_EPI_Template Nonlinear_MeanEPI_to_to_Multimodal_Study_Specific_T1_Template Nonlinear_MeanEPI_to_Unimodal_Study_Specific_EPI_Template Nonlinear_T1_to_KIDSPMTPM_GM Nonlinear_T1_to_Multimodal_Study_Specific_T1_Template SPM12_Coreg SPM12_NoCoreg SPM12_TOM8_NoCoreg SPM12_TOM8_TPMs_Coreg SPM8_Kid_TPM_No_Coreg SPM8_No_Coreg T1_to_MNI_Template

Contingency tables of subject distributions among the categorical variables:

***** End of data structure information *****
++++++++++++++++++++++++++++++++++++++++++++++++++++

Reading input files now...

Reading input files for effect estimates: Done!

Killed



Abridged contents of 3dICC_Run.sh:

3dICC -prefix Method_ICC3 -jobs 3 \
-mask MaskofMasks.nii \
-model '1+Method+(1|Subj)' \
-dataTable \
Subj Method InputFile \
M68200328 SPM8_No_Coreg SPM8_No_Coreg_M68200328.nii.gz \
M68201840 SPM8_No_Coreg SPM8_No_Coreg_M68201840.nii.gz \
M68202519 SPM8_No_Coreg SPM8_No_Coreg_M68202519.nii.gz \
....
M68201840 Affine_MeanEPI_to_KIDSPMTPM_GM Affine_MeanEPI_to_KIDSPMTPM_GM_M68201840.nii.gz \
M68202519 Affine_MeanEPI_to_KIDSPMTPM_GM Affine_MeanEPI_to_KIDSPMTPM_GM_M68202519.nii.gz \
M68203813 Affine_MeanEPI_to_KIDSPMTPM_GM Affine_MeanEPI_to_KIDSPMTPM_GM_M68203813.nii.gz \
....
M68200328 Affine_MeanEPI_to_Post_MNI_Averaged_Brain_Template Affine_MeanEPI_to_Post_MNI_Averaged_Brain_Template_M68200328.nii.gz \
M68201840 Affine_MeanEPI_to_Post_MNI_Averaged_Brain_Template Affine_MeanEPI_to_Post_MNI_Averaged_Brain_Template_M68201840.nii.gz \
M68202519 Affine_MeanEPI_to_Post_MNI_Averaged_Brain_Template Affine_MeanEPI_to_Post_MNI_Averaged_Brain_Template_M68202519.nii.gz \
....
M68200328 Affine_MeanEPI_to_T1_to_KIDSPMTPM_GM Affine_MeanEPI_to_T1_to_KIDSPMTPM_GM_M68200328.nii.gz \
M68201840 Affine_MeanEPI_to_T1_to_KIDSPMTPM_GM Affine_MeanEPI_to_T1_to_KIDSPMTPM_GM_M68201840.nii.gz \
M68202519 Affine_MeanEPI_to_T1_to_KIDSPMTPM_GM Affine_MeanEPI_to_T1_to_KIDSPMTPM_GM_M68202519.nii.gz \
....
M68200328 Affine_MeanEPI_to_T1_to_Multimodal_Study_Specific_EPI_Template Affine_MeanEPI_to_T1_to_Multimodal_Study_Specific_EPI_Template_M68200328.nii.gz \
M68201840 Affine_MeanEPI_to_T1_to_Multimodal_Study_Specific_EPI_Template Affine_MeanEPI_to_T1_to_Multimodal_Study_Specific_EPI_Template_M68201840.nii.gz \
M68202519 Affine_MeanEPI_to_T1_to_Multimodal_Study_Specific_EPI_Template Affine_MeanEPI_to_T1_to_Multimodal_Study_Specific_EPI_Template_M68202519.nii.gz \
....
M68200328 Affine_MeanEPI_to_T1_to_Post_MNI_Averaged_Brain_Template Affine_MeanEPI_to_T1_to_Post_MNI_Averaged_Brain_Template_M68200328.nii.gz \
M68201840 Affine_MeanEPI_to_T1_to_Post_MNI_Averaged_Brain_Template Affine_MeanEPI_to_T1_to_Post_MNI_Averaged_Brain_Template_M68201840.nii.gz \
M68202519 Affine_MeanEPI_to_T1_to_Post_MNI_Averaged_Brain_Template Affine_MeanEPI_to_T1_to_Post_MNI_Averaged_Brain_Template_M68202519.nii.gz \
....
M68200328 Affine_MeanEPI_to_to_Multimodal_Study_Specific_EPI_Template Affine_MeanEPI_to_to_Multimodal_Study_Specific_EPI_Template_M68200328.nii.gz \
M68201840 Affine_MeanEPI_to_to_Multimodal_Study_Specific_EPI_Template Affine_MeanEPI_to_to_Multimodal_Study_Specific_EPI_Template_M68201840.nii.gz \
M68202519 Affine_MeanEPI_to_to_Multimodal_Study_Specific_EPI_Template Affine_MeanEPI_to_to_Multimodal_Study_Specific_EPI_Template_M68202519.nii.gz \
....
M68200328 Affine_MeanEPI_to_Unimodal_Study_Specific_EPI_Template Affine_MeanEPI_to_Unimodal_Study_Specific_EPI_Template_M68200328.nii.gz \
M68201840 Affine_MeanEPI_to_Unimodal_Study_Specific_EPI_Template Affine_MeanEPI_to_Unimodal_Study_Specific_EPI_Template_M68201840.nii.gz \
M68202519 Affine_MeanEPI_to_Unimodal_Study_Specific_EPI_Template Affine_MeanEPI_to_Unimodal_Study_Specific_EPI_Template_M68202519.nii.gz \
....
M68200328 Affine_T1_to_KIDSPMTPM_GM Affine_T1_to_KIDSPMTPM_GM_M68200328.nii.gz \
M68201840 Affine_T1_to_KIDSPMTPM_GM Affine_T1_to_KIDSPMTPM_GM_M68201840.nii.gz \
M68202519 Affine_T1_to_KIDSPMTPM_GM Affine_T1_to_KIDSPMTPM_GM_M68202519.nii.gz \
....
M68200328 Affine_T1_to_Multimodal_Study_Specific_T1_Template Affine_T1_to_Multimodal_Study_Specific_T1_Template_M68200328.nii.gz \
M68201840 Affine_T1_to_Multimodal_Study_Specific_T1_Template Affine_T1_to_Multimodal_Study_Specific_T1_Template_M68201840.nii.gz \
M68202519 Affine_T1_to_Multimodal_Study_Specific_T1_Template Affine_T1_to_Multimodal_Study_Specific_T1_Template_M68202519.nii.gz \
....
M68200328 MeanEPI_to_MNI_Brain_Template MeanEPI_to_MNI_Brain_Template_M68200328.nii.gz \
M68201840 MeanEPI_to_MNI_Brain_Template MeanEPI_to_MNI_Brain_Template_M68201840.nii.gz \
M68202519 MeanEPI_to_MNI_Brain_Template MeanEPI_to_MNI_Brain_Template_M68202519.nii.gz \
....
M68200328 Nonlinear_MeanEPI_to_KIDSPMTPM_GM Nonlinear_MeanEPI_to_KIDSPMTPM_GM_M68200328.nii.gz \
M68201840 Nonlinear_MeanEPI_to_KIDSPMTPM_GM Nonlinear_MeanEPI_to_KIDSPMTPM_GM_M68201840.nii.gz \
M68202519 Nonlinear_MeanEPI_to_KIDSPMTPM_GM Nonlinear_MeanEPI_to_KIDSPMTPM_GM_M68202519.nii.gz \
....
M68200328 Nonlinear_MeanEPI_to_Post_MNI_Averaged_Brain_Template Nonlinear_MeanEPI_to_Post_MNI_Averaged_Brain_Template_M68200328.nii.gz \
M68201840 Nonlinear_MeanEPI_to_Post_MNI_Averaged_Brain_Template Nonlinear_MeanEPI_to_Post_MNI_Averaged_Brain_Template_M68201840.nii.gz \
M68202519 Nonlinear_MeanEPI_to_Post_MNI_Averaged_Brain_Template Nonlinear_MeanEPI_to_Post_MNI_Averaged_Brain_Template_M68202519.nii.gz \
....
M68200328 Nonlinear_MeanEPI_to_T1_to_KIDSPMTPM_GM Nonlinear_MeanEPI_to_T1_to_KIDSPMTPM_GM_M68200328.nii.gz \
M68201840 Nonlinear_MeanEPI_to_T1_to_KIDSPMTPM_GM Nonlinear_MeanEPI_to_T1_to_KIDSPMTPM_GM_M68201840.nii.gz \
M68202519 Nonlinear_MeanEPI_to_T1_to_KIDSPMTPM_GM Nonlinear_MeanEPI_to_T1_to_KIDSPMTPM_GM_M68202519.nii.gz \
....
M68200328 Nonlinear_MeanEPI_to_T1_to_Multimodal_Study_Specific_EPI_Template Nonlinear_MeanEPI_to_T1_to_Multimodal_Study_Specific_EPI_Template_M68200328.nii.gz \
M68201840 Nonlinear_MeanEPI_to_T1_to_Multimodal_Study_Specific_EPI_Template Nonlinear_MeanEPI_to_T1_to_Multimodal_Study_Specific_EPI_Template_M68201840.nii.gz \
M68202519 Nonlinear_MeanEPI_to_T1_to_Multimodal_Study_Specific_EPI_Template Nonlinear_MeanEPI_to_T1_to_Multimodal_Study_Specific_EPI_Template_M68202519.nii.gz \
....
M68200328 Nonlinear_MeanEPI_to_T1_to_Post_MNI_Averaged_Brain_Template Nonlinear_MeanEPI_to_T1_to_Post_MNI_Averaged_Brain_Template_M68200328.nii.gz \
M68201840 Nonlinear_MeanEPI_to_T1_to_Post_MNI_Averaged_Brain_Template Nonlinear_MeanEPI_to_T1_to_Post_MNI_Averaged_Brain_Template_M68201840.nii.gz \
M68202519 Nonlinear_MeanEPI_to_T1_to_Post_MNI_Averaged_Brain_Template Nonlinear_MeanEPI_to_T1_to_Post_MNI_Averaged_Brain_Template_M68202519.nii.gz \
....
M68200328 Nonlinear_MeanEPI_to_T1_to_Unimodal_EPI_Study_Specific_Template Nonlinear_MeanEPI_to_T1_to_Unimodal_EPI_Study_Specific_Template_M68200328.nii.gz \
M68201840 Nonlinear_MeanEPI_to_T1_to_Unimodal_EPI_Study_Specific_Template Nonlinear_MeanEPI_to_T1_to_Unimodal_EPI_Study_Specific_Template_M68201840.nii.gz \
M68202519 Nonlinear_MeanEPI_to_T1_to_Unimodal_EPI_Study_Specific_Template Nonlinear_MeanEPI_to_T1_to_Unimodal_EPI_Study_Specific_Template_M68202519.nii.gz \
....
M68200328 Nonlinear_MeanEPI_to_to_Multimodal_Study_Specific_EPI_Template Nonlinear_MeanEPI_to_to_Multimodal_Study_Specific_EPI_Template_M68200328.nii.gz \
M68201840 Nonlinear_MeanEPI_to_to_Multimodal_Study_Specific_EPI_Template Nonlinear_MeanEPI_to_to_Multimodal_Study_Specific_EPI_Template_M68201840.nii.gz \
M68202519 Nonlinear_MeanEPI_to_to_Multimodal_Study_Specific_EPI_Template Nonlinear_MeanEPI_to_to_Multimodal_Study_Specific_EPI_Template_M68202519.nii.gz \
....
M68200328 Nonlinear_MeanEPI_to_to_Multimodal_Study_Specific_T1_Template Nonlinear_MeanEPI_to_to_Multimodal_Study_Specific_T1_Template_M68200328.nii.gz \
M68201840 Nonlinear_MeanEPI_to_to_Multimodal_Study_Specific_T1_Template Nonlinear_MeanEPI_to_to_Multimodal_Study_Specific_T1_Template_M68201840.nii.gz \
M68202519 Nonlinear_MeanEPI_to_to_Multimodal_Study_Specific_T1_Template Nonlinear_MeanEPI_to_to_Multimodal_Study_Specific_T1_Template_M68202519.nii.gz \
....
M68200328 Nonlinear_MeanEPI_to_Unimodal_Study_Specific_EPI_Template Nonlinear_MeanEPI_to_Unimodal_Study_Specific_EPI_Template_M68200328.nii.gz \
M68201840 Nonlinear_MeanEPI_to_Unimodal_Study_Specific_EPI_Template Nonlinear_MeanEPI_to_Unimodal_Study_Specific_EPI_Template_M68201840.nii.gz \
M68202519 Nonlinear_MeanEPI_to_Unimodal_Study_Specific_EPI_Template Nonlinear_MeanEPI_to_Unimodal_Study_Specific_EPI_Template_M68202519.nii.gz \
....
M68200328 Nonlinear_T1_to_KIDSPMTPM_GM Nonlinear_T1_to_KIDSPMTPM_GM_M68200328.nii.gz \
M68201840 Nonlinear_T1_to_KIDSPMTPM_GM Nonlinear_T1_to_KIDSPMTPM_GM_M68201840.nii.gz \
M68202519 Nonlinear_T1_to_KIDSPMTPM_GM Nonlinear_T1_to_KIDSPMTPM_GM_M68202519.nii.gz \
....
M68200328 Nonlinear_T1_to_Multimodal_Study_Specific_T1_Template Nonlinear_T1_to_Multimodal_Study_Specific_T1_Template_M68200328.nii.gz \
M68201840 Nonlinear_T1_to_Multimodal_Study_Specific_T1_Template Nonlinear_T1_to_Multimodal_Study_Specific_T1_Template_M68201840.nii.gz \
M68202519 Nonlinear_T1_to_Multimodal_Study_Specific_T1_Template Nonlinear_T1_to_Multimodal_Study_Specific_T1_Template_M68202519.nii.gz \
....
M68200328 SPM12_Coreg SPM12_Coreg_M68200328.nii.gz \
M68201840 SPM12_Coreg SPM12_Coreg_M68201840.nii.gz \
M68202519 SPM12_Coreg SPM12_Coreg_M68202519.nii.gz \
....
M68200328 SPM12_NoCoreg SPM12_NoCoreg_M68200328.nii.gz \
M68201840 SPM12_NoCoreg SPM12_NoCoreg_M68201840.nii.gz \
M68202519 SPM12_NoCoreg SPM12_NoCoreg_M68202519.nii.gz \
....
M68200328 SPM12_TOM8_NoCoreg SPM12_TOM8_NoCoreg_M68200328.nii.gz \
M68201840 SPM12_TOM8_NoCoreg SPM12_TOM8_NoCoreg_M68201840.nii.gz \
M68202519 SPM12_TOM8_NoCoreg SPM12_TOM8_NoCoreg_M68202519.nii.gz \
....
M68200328 SPM12_TOM8_TPMs_Coreg SPM12_TOM8_TPMs_Coreg_M68200328.nii.gz \
M68201840 SPM12_TOM8_TPMs_Coreg SPM12_TOM8_TPMs_Coreg_M68201840.nii.gz \
M68202519 SPM12_TOM8_TPMs_Coreg SPM12_TOM8_TPMs_Coreg_M68202519.nii.gz \
....
M68200328 SPM8_Kid_TPM_No_Coreg SPM8_Kid_TPM_No_Coreg_M68200328.nii.gz \
M68201840 SPM8_Kid_TPM_No_Coreg SPM8_Kid_TPM_No_Coreg_M68201840.nii.gz \
M68202519 SPM8_Kid_TPM_No_Coreg SPM8_Kid_TPM_No_Coreg_M68202519.nii.gz \
....
M68200328 T1_to_MNI_Template T1_to_MNI_Template_M68200328.nii.gz \
M68201840 T1_to_MNI_Template T1_to_MNI_Template_M68201840.nii.gz \
M68202519 T1_to_MNI_Template T1_to_MNI_Template_M68202519.nii.gz \
Subject Author Posted

3dICC Killed after Initialization

tpderamus February 26, 2021 11:55PM

Re: 3dICC Killed after Initialization

Gang February 28, 2021 07:46PM

Re: 3dICC Killed after Initialization

tpderamus March 01, 2021 09:58AM

Re: 3dICC Killed after Initialization

tpderamus March 05, 2021 05:57AM

Re: 3dICC Killed after Initialization

Gang March 06, 2021 09:05AM

Re: 3dICC Killed after Initialization

Daniel Glen March 06, 2021 11:55AM

Re: 3dICC Killed after Initialization

tpderamus June 14, 2022 12:00AM

Re: 3dICC Killed after Initialization

tpderamus June 14, 2022 06:27AM

Re: 3dICC Killed after Initialization

tpderamus July 12, 2022 10:25AM

Re: 3dICC Killed after Initialization

Gang July 13, 2022 11:05AM



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