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September 09, 2021 10:25AM
Hi Paul,

Thanks for your quick reply. When specifying -olay_alpha Yes -olay_boxed Yes, is there a way to then also account for the cluster extend threshold of k =10 that was suggested in the preprint? So far, I could get Example 5 to work with a lenient p=0.05 showing highlighted data, but not accounting for the suggested cluster size k=10. Likewise, I can get Example 6 to work where 3dClusterize is run firstly so that the plotted overlay only contains voxels surviving p=0.05 and k=10, but then I cannot plot the sub threshold voxels. From how I understood the suggestion in the preprint, it would be ideal to present the data in a way that combines the advantages of Example 5 and 6. If you could give me pointers on how to achieve that, that would be highly appreciated.

Many thanks,
Stef
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Sticky Thoughts about modeling and result reporting

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