Hello,
So, I actually find that the mistake was coming on my side (my study template was not centred on 0).
Animal_warper seems to have worked without problems on 90 macaques images... I still need to validate that precisely =)
Note that, I previously skullstrip and centred on 0 my original anatomical images before passing them into animal_warper
Just to clarify my previous question,
I plan to measure the Jacobian with 3dNwarpFuncs (from individual space to template).
Based on Paul message, I am now confused about the correct WARP for this analysis in order the measure the deformations:
Is it:
_shft_WARP.nii.gz (which would make sense to me)
or
_shft_WARP.nii.gz concatenated with _composite_linear_to_template.1D
or
_shft_base2osh_WARP (this is the only WARP in the indiv space)
or something else?
thanks!
Clément
