AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 27, 2022 12:21PM
Hi Renat,

I did not realize NIFTI vs. BRIK output was your concern.

Note that you can easily convert to NIFTI afterwards with something like:

3dcopy dzne_MPRAGE_1iso_PAT2_s03_deface+tlrc dzne_MPRAGE_1iso_PAT2_s03_deface.nii.gz

But looking at the help, it seems that if you want NIFTI output, specify that with -prefix, as in:

@afni_refacer_run -input dzne_MPRAGE_1iso_PAT2_s03.nii.gz -mode_reface -prefix reface.dzne.de.nii.gz

Does that seem reasonable?

- rick
Subject Author Posted

"No output dataset will be calculated" while running refacer

renyak June 24, 2022 03:37AM

Re: "No output dataset will be calculated" while running refacer

rick reynolds June 24, 2022 04:50PM

Re: "No output dataset will be calculated" while running refacer

renyak June 27, 2022 11:17AM

Re: "No output dataset will be calculated" while running refacer

rick reynolds June 27, 2022 12:21PM

Re: "No output dataset will be calculated" while running refacer

renyak June 29, 2022 06:57AM

Re: "No output dataset will be calculated" while running refacer

rick reynolds June 29, 2022 10:23AM

Re: "No output dataset will be calculated" while running refacer

ptaylor June 29, 2022 02:42PM

Re: "No output dataset will be calculated" while running refacer

renyak July 01, 2022 05:54AM