AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 29, 2022 10:23AM
Hi Renat,

Xvfb is necessary for @chauffeur_afni. Xvfb is an X11 virtual frame buffer program, making the command run "as if" there were an X11 server, but without actually needing one. That is why it can run on a remote machine, or one without any display.

In this virtual X11 environment, @chauffeur_afni can actually run afni's graphical commands to generate and save images (used in the QC report).

So this becomes like starting afni, loading datasets, jumping to coordinates, setting overlays, threshold, clustering, making montages, etc., and then finally saving the images in the afni GUI windows to disk, and possibly even stitching them together. All of this can happen with a single such call to @chauffeur_afni. But we do not see it happening, because it is using a virtual X11 server. We just see the final images sitting on the disk.

So in the end, you cannot get the QC images with Xvfb, sorry.

- rick
Subject Author Posted

"No output dataset will be calculated" while running refacer

renyak June 24, 2022 03:37AM

Re: "No output dataset will be calculated" while running refacer

rick reynolds June 24, 2022 04:50PM

Re: "No output dataset will be calculated" while running refacer

renyak June 27, 2022 11:17AM

Re: "No output dataset will be calculated" while running refacer

rick reynolds June 27, 2022 12:21PM

Re: "No output dataset will be calculated" while running refacer

renyak June 29, 2022 06:57AM

Re: "No output dataset will be calculated" while running refacer

rick reynolds June 29, 2022 10:23AM

Re: "No output dataset will be calculated" while running refacer

ptaylor June 29, 2022 02:42PM

Re: "No output dataset will be calculated" while running refacer

renyak July 01, 2022 05:54AM