AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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ptaylor
January 19, 2023 04:08PM
Hi, Ian-

The output text suggests that the overlap of the two datasets is poor to start with. We can check that visually---what is the output of this: 
@djunct_overlap_check \
    -ulay AP1009B_anat_ns+orig \
    -olay MNI_avg152T1+tlrc
... which might produce 2 images, if either of the ulay/olay contains obliquity in the header.

Also, can I ask the context that this is being run in? Is this part of an FMRI processing pipeline?

thanks,
pt
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@auto_tlrc Not Automatically Applying "-xform"

brainboi January 19, 2023 01:49PM

Re: @auto_tlrc Not Automatically Applying "-xform"

ptaylor January 19, 2023 04:08PM

Re: @auto_tlrc Not Automatically Applying "-xform" Attachments

brainboi January 20, 2023 02:32AM

Re: @auto_tlrc Not Automatically Applying "-xform"

brainboi February 11, 2023 07:54PM

Re: @auto_tlrc Not Automatically Applying "-xform"

Daniel Glen February 14, 2023 11:07AM