AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 10, 2023 05:29PM
Hi, Philipp-

Thanks for that explanation.

When you refer to the Scaefer-Yeo dataset, I guess that means that atlas (ROI map of regions), right? That is different than a template.

But the main point is you want to use this ROI information with the errts file (or more specifically autocorrelation derived from errts file) information? Can you please check that your Resample_Yeo7N_1000ribbon.nii and errts* datasets are on the same grid, using the "3dinfo -same_all_grid .." information?

Also, I don't see why you want to get coordinate information from Resample_Yeo7N_1000ribbon.nii and replace that information from the earlier 1D files. If the errts data are not on the same grid as the Resample*ribbon.nii file, then it should not be used to replace coordinates. If those two files are on the same grid, then replacing coordinates is unnecessary and might just lead to a scripting issue. Actually, I don't see how Resample_Yeo7N_1000ribbon.nii is used at all here.

--pt
Subject Author Posted

Extracting voxel-wise data with 3dmaskdump and recombing it with 3dUndump Attachments

Philipp April 10, 2023 07:59AM

Re: Extracting voxel-wise data with 3dmaskdump and recombing it with 3dUndump Attachments

Philipp April 10, 2023 08:13AM

Re: Extracting voxel-wise data with 3dmaskdump and recombing it with 3dUndump

ptaylor April 10, 2023 09:23AM

Re: Extracting voxel-wise data with 3dmaskdump and recombing it with 3dUndump Attachments

Philipp April 10, 2023 12:53PM

Re: Extracting voxel-wise data with 3dmaskdump and recombing it with 3dUndump

ptaylor April 10, 2023 03:18PM

Re: Extracting voxel-wise data with 3dmaskdump and recombing it with 3dUndump

Philipp April 10, 2023 03:20PM

Re: Extracting voxel-wise data with 3dmaskdump and recombing it with 3dUndump

Philipp April 10, 2023 03:31PM

Re: Extracting voxel-wise data with 3dmaskdump and recombing it with 3dUndump

ptaylor April 10, 2023 03:38PM

Re: Extracting voxel-wise data with 3dmaskdump and recombing it with 3dUndump

Philipp April 10, 2023 03:47PM

Re: Extracting voxel-wise data with 3dmaskdump and recombing it with 3dUndump

ptaylor April 10, 2023 04:56PM

Re: Extracting voxel-wise data with 3dmaskdump and recombing it with 3dUndump

Philipp April 10, 2023 05:11PM

Re: Extracting voxel-wise data with 3dmaskdump and recombing it with 3dUndump

ptaylor April 10, 2023 05:29PM

Re: Extracting voxel-wise data with 3dmaskdump and recombing it with 3dUndump

Philipp April 10, 2023 05:40PM

Re: Extracting voxel-wise data with 3dmaskdump and recombing it with 3dUndump

Philipp April 10, 2023 05:47PM

Re: Extracting voxel-wise data with 3dmaskdump and recombing it with 3dUndump

Philipp April 11, 2023 04:01AM

Re: Extracting voxel-wise data with 3dmaskdump and recombing it with 3dUndump

ptaylor April 11, 2023 09:54AM

Re: Extracting voxel-wise data with 3dmaskdump and recombing it with 3dUndump

Philipp April 11, 2023 02:14PM

Re: Extracting voxel-wise data with 3dmaskdump and recombing it with 3dUndump

rick reynolds April 18, 2023 04:12PM