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May 25, 2023 02:05PM
Hi,

I have a question regarding scaling in the preprocessing using AFNI proc.
When preprocessing a run with a resting-state script using the following blocks

-blocks despike tshift blur mask scale regress \

the .errts output file does not have a mean of 100 and it lacks the range from 0 to 200 (as the "scale" preprocessing block).
It seems that the .errts mean is 0, but how is the range defined?

Is the .errts still compareable across subjects, or do I have to again scale the preprocessed .errts output via 3dTnorm? I assume that running 3dTnorm on the errts is not advised, but I wanted to be 100% certain about this.

Thanks,
Philipp
Subject Author Posted

Scaling in AFNI proc for the .errts resting-state output

Philipp May 25, 2023 02:05PM

Re: Scaling in AFNI proc for the .errts resting-state output

ptaylor May 25, 2023 02:24PM

Re: Scaling in AFNI proc for the .errts resting-state output

Philipp May 25, 2023 02:38PM

Re: Scaling in AFNI proc for the .errts resting-state output

ptaylor May 25, 2023 03:04PM

Re: Scaling in AFNI proc for the .errts resting-state output

Philipp May 26, 2023 03:51AM