AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 09, 2004 03:03AM
Further info:
On further fiddling with test BRIKs that have 3D test objects (like the pyramid with intensity 128) in a volume otherwise filled with low-level (0..20) random noise values ....

It appears the viewer has a sharp change of brightness/contrast behavior at the 1312-or-so bright pixels point. On slices that have a count of bright pixels above that level, the viewer sets the brightness/contrast to something reasonable for viewing.

On slices having less than 1312 bright pixels, the viewer's brightness/cotnrast behavior is suddenly dominated by the background noise. The brighter object of interest (intensity 128) translates to no brighter than the brightest noise (intensity 20) ie: its brightness is clipped .

On such a slice, playing with the manual brightness/contrast buttons never arrives at a setting where the bright object stands out brighter than the noise.

So this suggests some fundamental issue with the viewer's pixel-by-pixel calculation of on-screen brightness, rather than simply poor automatic choice of b/c settings.

Hope that helps.

Graham
Subject Author Posted

AFNI viewer bug -- invisible images

Graham Wideman January 09, 2004 02:46AM

Re: AFNI viewer bug -- invisible images

Graham Wideman January 09, 2004 03:03AM

Re: AFNI viewer bug -- invisible images

Graham Wideman January 09, 2004 03:06AM

Re: AFNI viewer bug -- invisible images

Hauke January 09, 2004 03:23AM

Re: AFNI viewer bug -- invisible images

Ziad Saad January 09, 2004 09:01AM

Re: AFNI viewer bug -- invisible images

Graham Wideman January 09, 2004 09:03PM

Re: AFNI viewer bug -- invisible images

rick reynolds January 10, 2004 11:27AM

Re: AFNI viewer bug -- invisible images

Graham Wideman January 12, 2004 06:08PM

Re: AFNI viewer bug -- invisible images

bob cox January 12, 2004 08:45AM

Re: AFNI viewer bug -- invisible images

Graham Wideman January 12, 2004 06:08PM