AFNI Message Board

Dear AFNI users-

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Sincerely, AFNI HQ

History of AFNI updates  

|
January 18, 2005 12:29PM
Good Morning

I've successfully moved the roi from the standardized SUMA brain to volumetric data (verified by viewing in AFNI). Then I've tried to put it back onto the original SUMA surface, which looks like random speckles. Do you have any idea why this is the case?

Thanks again
Jennine


The commands I've used are below:

sed 1,8d lh_insula.1D.roi > lh_insula.1D.dset

3dSurf2Vol \
-spec AM-04V_lh_std.spec \
-sv AM-04VSUMA_SurfVol_Alnd_Exp+orig \
-surf_A wm \
-surf_B pial \
-sdata_1D lh_insula_roi.dset \
-f_steps 10 \
-grid_parent AM-04VSUMA_SurfVol_Alnd_Exp+orig \
-map_func ave \
-prefix lh_insula_roi+orig

3dVol2Surf \
-spec AM-04VSUMA_lh.spec \
-sv lh_insula_roi+orig \
-surf_A lh.smoothwm \
-surf_B lh.pial \
-grid_parent AM-04VSUMA_SurfVol+orig \
-map_func max \
-f_steps 10 \
-debug 0 \
-f_index nodes \
-oob_value 0.0 \
-out_1D lh.insula.1D.dset
Subject Author Posted

SUMA standardized to unstandardized surfaces

Jennine January 14, 2005 03:07PM

Re: SUMA standardized to unstandardized surfaces

Ziad S. Saad January 14, 2005 04:13PM

Re: SUMA standardized to unstandardized surfaces

Jennine January 18, 2005 12:29PM

Re: SUMA standardized to unstandardized surfaces

rick reynolds January 18, 2005 12:45PM

THANK YOU!

Jennine January 18, 2005 12:57PM

False alarm-still need help

Jennine January 18, 2005 01:11PM

Re: False alarm-still need help

rick reynolds January 18, 2005 01:18PM

my fault - not paying attention

rick reynolds January 18, 2005 01:28PM

Re: my fault - not paying attention

Jennine January 18, 2005 01:37PM

Re: anterior shift

rick reynolds January 18, 2005 01:50PM

Re: anterior shift

vitaly January 18, 2005 01:59PM

Re: anterior shift

Jennine January 18, 2005 02:52PM

This might help

Ziad S. Saad January 19, 2005 10:15AM

Yes it did-quick question

Jennine January 19, 2005 05:02PM

Re: SUMA standardized to unstandardized surfaces

rick reynolds January 18, 2005 01:33PM

Re: SUMA standardized to unstandardized surfaces

Jennine January 18, 2005 01:38PM

Re: SUMA standardized to unstandardized surfaces

Ziad S. Saad January 18, 2005 01:53PM

Re: SUMA standardized to unstandardized surfaces

Ziad S. Saad January 24, 2005 01:53PM