AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
January 18, 2005 01:18PM
Hi Jennine,

So that shows that lh_insula.1D.roi is appropriate to
use as input to 3dSurf2Vol directly. Do not strip the
node numbers via sed.

So run that command with the original roi file, and look
at the new lh_insula_roi+orig dataset in afni, and make
sure that it looks like your ROI. Be sure that you get rid
of the old lh_insula_roi+orig dataset first.

\rm lh_insula_roi+orig.*

3dSurf2Vol \
-spec AM-04V_lh_std.spec \
-sv AM-04VSUMA_SurfVol_Alnd_Exp+orig \
-surf_A wm \
-surf_B pial \
-sdata_1D lh_insula.1D.roi \
-f_steps 10 \
-grid_parent AM-04VSUMA_SurfVol_Alnd_Exp+orig \
-map_func ave \
-prefix lh_insula_roi

If this looks good in afni, then run your 3dVol2Surf
command again.

- rick

Subject Author Posted

SUMA standardized to unstandardized surfaces

Jennine January 14, 2005 03:07PM

Re: SUMA standardized to unstandardized surfaces

Ziad S. Saad January 14, 2005 04:13PM

Re: SUMA standardized to unstandardized surfaces

Jennine January 18, 2005 12:29PM

Re: SUMA standardized to unstandardized surfaces

rick reynolds January 18, 2005 12:45PM

THANK YOU!

Jennine January 18, 2005 12:57PM

False alarm-still need help

Jennine January 18, 2005 01:11PM

Re: False alarm-still need help

rick reynolds January 18, 2005 01:18PM

my fault - not paying attention

rick reynolds January 18, 2005 01:28PM

Re: my fault - not paying attention

Jennine January 18, 2005 01:37PM

Re: anterior shift

rick reynolds January 18, 2005 01:50PM

Re: anterior shift

vitaly January 18, 2005 01:59PM

Re: anterior shift

Jennine January 18, 2005 02:52PM

This might help

Ziad S. Saad January 19, 2005 10:15AM

Yes it did-quick question

Jennine January 19, 2005 05:02PM

Re: SUMA standardized to unstandardized surfaces

rick reynolds January 18, 2005 01:33PM

Re: SUMA standardized to unstandardized surfaces

Jennine January 18, 2005 01:38PM

Re: SUMA standardized to unstandardized surfaces

Ziad S. Saad January 18, 2005 01:53PM

Re: SUMA standardized to unstandardized surfaces

Ziad S. Saad January 24, 2005 01:53PM