I'm sorry, I should have figured this out. This makes sense now. Thank you very much for your help.
Jatin
Gang Chen wrote:
>
> I actually tried the -stim_nptr option first. Since I have
> one image every 1.5
> > TR, I used the following set-up: -stim_nptr 1.5
>
> I believe the option should be something like
>
> -stim_nptr k 2
>
> where k is the index for stimulus. The reason is that each
> event in your design lasts for 3 seconds, e.g., 1.5 TR's. So
> you want to break each TR into two finer grids to adapt to the
> situation. And that is why you want a number of 2 in the above
> option. You have to be very careful with other options with
> this solution. Read 3dDeconvolve manual for more details on
> page 23:
>
>
http://afni.nimh.nih.gov/pub/dist/doc/manual/3dDeconvolve.pdf
>
> Gang