AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 02, 2006 12:44PM
I'm using the


to3d -time:zt 124 1 1s seq+z '3D:0:0:256:256:1:filename'


command and it is giving me a nicely centered, clean image.

When I try


to3d -time:zt 124 1 1s seq+z filename


terminal gives me an error:

--------------------
to3d: 2D slices into 3D datasets for AFNI, by RW Cox
Illegal value of nt after -time: option
Counting images: total=124 2D slices
** DICOM ERROR: unknown VR code
in element (0008,0005)
do not recognize image file case3_sag__000.dcm
length seen as 141496
*** cannot read first file! ***
--------------------


Again, the images look great with the first command I listed. Is it better to use the one you suggested? If so, how do I get around that error?

Thanks,
Dmitry
Subject Author Posted

Shifted MRI anatomy images

Dmitry January 26, 2006 11:14AM

Re: Shifted MRI anatomy images

rick reynolds January 30, 2006 09:47AM

Re: Shifted MRI anatomy images

Zhark January 30, 2006 09:59AM

Re: Shifted MRI anatomy images

Dmitry January 30, 2006 11:29AM

Re: Shifted MRI anatomy images

Zhark January 30, 2006 11:55AM

Re: Shifted MRI anatomy images

Dmitry January 30, 2006 12:44PM

Re: Shifted MRI anatomy images

rick reynolds January 30, 2006 12:51PM

Re: Shifted MRI anatomy images

Dmitry February 02, 2006 12:44PM