AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
December 01, 2009 02:34AM
hi everybody
I ran the command as the followling:
@auto_tlrc -base TT_avg152T1+tlrc -input card_GBM00703369CT20070908_im001_022+orig -suffix _ref_avg152T1 -ok_notice -OK_maxite

I receive the error messages as following:


*********** Warning *************
Dataset centers are 46.750208 mm
apart. If registration fails, or if
parts of the original anatomy gets
cropped, try recentering all the
input data using this command:
@Align_Centers -base /usr/local/afni/linux_xorg7_64/TT_avg152T1+tlrc \
-dset card_GBM00703369CT20070908_im001_022+orig \
-child ./*.HEAD\

Then rerun @auto_tlrc using the _shft
version of your datasets.

*********************************

Padding ...
++ 3dZeropad: AFNI version=AFNI_2008_07_18_1710 (Aug 14 2009) [64-bit]
++ output dataset: ./__ats_tmp__ref_TT_avg152T1_40pad+tlrc.BRIK
Skull Stripping ...
-- Error SUMA_SurfGridIntersect (SUMA_BrainWrap.c:1974):
Failed to find seed!

Fatal Signal 11 (SIGSEGV) received
3dSkullStrip
Bottom of Debug Stack
** AFNI version = AFNI_2008_07_18_1710 Compile date = Aug 14 2009
** [[Precompiled binary linux_xorg7_64: Aug 14 2009]]
** Program Abort **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
Error: Failed to create skull stripped brain

I would thanks a lot if someone could give me some advice to solve this problem.

Thank you very much
Subject Author Posted

@auto_tlrc question

Pat Bedard April 20, 2007 06:02PM

Re: @auto_tlrc question

ziad April 23, 2007 09:40AM

Re: @auto_tlrc question

Pat Bedard April 23, 2007 02:26PM

Re: @auto_tlrc question

ziad April 24, 2007 09:21AM

Re: @auto_tlrc question

Pat Bedard April 24, 2007 10:10AM

Re: @auto_tlrc question

ziad April 30, 2007 10:24AM

Re: @auto_tlrc question

Pat Bedard April 30, 2007 11:51AM

Re: @auto_tlrc question

ziad April 30, 2007 03:53PM

Re: @auto_tlrc question

Pat Bedard April 30, 2007 04:57PM

Re: @auto_tlrc question

ziad May 01, 2007 08:46AM

Re: @auto_tlrc question

ziad May 02, 2007 10:59AM

Re: @auto_tlrc question

Matthew Hoptman July 10, 2007 10:59PM

Re: @auto_tlrc question

rick reynolds July 11, 2007 08:29AM

Re: @auto_tlrc question

Matthew Hoptman July 12, 2007 10:43AM

Re: @auto_tlrc question

rick reynolds July 12, 2007 11:17AM

Re: @auto_tlrc question

Sarah July 15, 2007 03:59PM

Re: @auto_tlrc question

ziad July 16, 2007 09:55AM

Re: @auto_tlrc question

Sarah July 17, 2007 07:44AM

Re: @auto_tlrc question

ziad July 17, 2007 03:27PM

Re: @auto_tlrc question

rick reynolds July 17, 2007 04:04PM

Re: @auto_tlrc question

ziad July 17, 2007 04:24PM

Re: @auto_tlrc question

Sarah July 17, 2007 07:10PM

Re: @auto_tlrc question

ziad July 18, 2007 09:32AM

Re: @auto_tlrc question

Sarah July 18, 2007 09:24PM

Re: @auto_tlrc question

rick reynolds July 18, 2007 11:08PM

Re: @auto_tlrc question

yung December 01, 2009 02:34AM

Re: @auto_tlrc question

ziad December 01, 2009 09:10AM

Re: @auto_tlrc question

yung December 01, 2009 09:50AM

Re: @auto_tlrc question

ziad December 01, 2009 10:46AM