AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
aparna
September 04, 2007 06:30PM
Hi Rick,

Yes, it is a anatomical dataset. But I just realised something (which I should have realised earlier and saved ur time :) ). Dimon actually performed 2 dicom sorts , hence the first file in my raw directory was not the actual first file. When i check the co-ods for the first file as specified by dimon they match. Sorry for wasting your time.

Just one more question. In the case where the first raw image was being displayed as the last sagittal slice (upper left corner) coods is actually correctly specified by Dimon as the first file. I am confused as to why then does it show up as the last sagittal slice instead of first?
Dimon says:

final run statistics:
volume info :
slices : 160
z_first : -96.4718
z_last : 78.2312
z_delta : 1.0988

run # 5 : volumes = 1, first file (#0) = 1.3.12.2.1107.5.2.6.24063.30000007081616442629600002335

But in the sagittal viewer the 0th slice is x : 78.2312 and the 159th slice is x= -96.4718. Should\'nt it be the other way around? Wonder what I have overlooked this time!!
(Is an afni default that sagittal view always goes from left to right?)

Thanks for your patience,
aparna
Subject Author Posted

Dimon?

aparna September 04, 2007 01:29PM

Re: Dimon?

rick reynolds September 04, 2007 02:19PM

Re: Dimon?

aparna September 04, 2007 03:59PM

Re: Dimon?

rick reynolds September 04, 2007 04:21PM

Re: Dimon?

aparna September 04, 2007 06:30PM

Re: Dimon?

rick reynolds September 04, 2007 08:48PM

Voxel indexes

bob cox September 05, 2007 09:20AM

Re: Voxel indexes

aparna September 05, 2007 10:21AM