Dear afni users,
I have 2 questions regarding to3d -
(1) I used to3d to convert a set of *.dcm file and I can't save the
file into BRIK file. The error messages were like:
[yuhanmc@benq-8bf694922b DICOM]$ to3d -prefix anat *.dcm
++ to3d: AFNI version=AFNI_2007_05_29_1644 (Jan 9 2008) [32-bit]
++ Authored by: RW Cox
++ Counting images: total=95 2D slices
++ Each 2D slice is 256 X 256 pixels
++ Voxel dimensions: 1.0000 X 1.0000 X 5.0000 mm
++ Image data type = short
++ Reading images: ...............................
*+ WARNING: Image Positions do not lie in same direction as cross
product vector: -0.905430
*+ WARNING: *** ILLEGAL INPUTS (cannot save) ***
Axes orientations are not consistent!
++ Making widgets.....
(2) I used to3d converted another set of *.IMA files to BRIK file. The
images were being cut in half when I use afni to view the BRIK file.
However, when I use SPM to view the nifti file from the same set of
data, there was no such kind of problem. Is there a way to upload my
IMA.tar file (it's too big) so people could take a look at the
problems ?
Thank you so much !!
Yuhan