Thanks.
i used wget to acquire align_epi_anat.py today. No matter how i run it, it throws the error:
Traceback (most recent call last):
File ".//align_epi_anat.py", line 1359, in ?
ps.init_opts()
File ".//align_epi_anat.py", line 268, in init_opts
helpstr="EPI dataset to align or to which to align")
TypeError: add_opt() got an unexpected keyword argument 'helpstr'
Version AFNI_2007_05_29_1644
[[Precompiled binary linux_gcc32: Dec 31 2007]]
When i run 3dAllineate separately with the flag "-cost lpc" my alignment ends up way off. That is why i'm trying to understand what flags i might be missing.
thanks