AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
July 28, 2008 11:28AM
Hi, I am getting different results using 3dmerge vs. 3dclust, whereby 3dmerge is finding no clusters, whereas 3dclust is (see below). Am I making a errot somewhere?
Liat

3dmerge -prefix xxxxx -1thresh 2.879 -1clust_order 5 -22 Trait_FC_T_Test_FSeed_Nacc_stats_pi_final_Z+tlrc.

Program 3dmerge
++ 3dmerge: AFNI version=AFNI_2008_07_18_1710 (Jul 24 2008) [32-bit]
3dmerge: edit and combine 3D datasets, by RW Cox
++ default -1dindex = 0
++ default -1tindex = 1
++ editing input dataset in memory (1.3 MB)
*** NO CLUSTERS FOUND ***
.
USING 3dclust (from new clusterize GUI)
------------------

3dclust -1dindex 0 -1tindex 1 -2thresh -2.879 2.879 5 594 Trait_FC_T_Test_FSeed_Nacc_stats_pi_final_Z+
tlrc.
++ 3dclust: AFNI version=AFNI_2008_07_18_1710 (Jul 24 2008) [32-bit]
++ Authored by: RW Cox et al
#
#Cluster report for file Trait_FC_T_Test_FSeed_Nacc_stats_pi_final_Z+tlrc.
#[Connectivity radius = 5.00 mm Volume threshold = 594.00 ]
#[Single voxel volume = 27.0 (microliters) ]
#[Voxel datum type = short ]
#[Voxel dimensions = 3.000 mm X 3.000 mm X 3.000 mm ]
#[Coordinates Order = RAI ]
#Mean and SEM based on Absolute Value of voxel intensities:
#
#Volume CM RL CM AP CM IS minRL maxRL minAP maxAP minIS maxIS Mean SEM Max Int MI RL MI AP MI IS
#------ ----- ----- ----- ----- ----- ----- ----- ----- ----- ------- ------- ------- ----- ----- -----
2511 29.4 84.0 -4.0 16.5 58.5 82.5 88.5 -15.5 11.5 4.1e-04 3.0e-05 -0.0015 25.5 82.5 -9.5
972 -0.2 -34.7 0.9 -7.5 4.5 -40.5 -25.5 -6.5 5.5 0.0042 7.2e-05 -0.0049 -1.5 -34.5 -3.5
#------ ----- ----- ----- ----- ----- ----- ----- ----- ----- ------- ------- ------- ----- ----- -----
# 3483 5.8 -10.7 -0.1
Subject Author Posted

3dmerge & 3dclust inconsistency

Liat July 28, 2008 11:28AM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 28, 2008 12:41PM

Re: 3dmerge & 3dclust inconsistency

Liat July 28, 2008 12:56PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 28, 2008 09:53PM

Re: 3dmerge & 3dclust inconsistency

jinny July 28, 2008 01:11PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 28, 2008 10:01PM

Re: 3dmerge & 3dclust inconsistency

Liat July 29, 2008 03:50PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 29, 2008 10:09PM

Re: 3dmerge & 3dclust inconsistency

Liat July 30, 2008 08:24AM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 30, 2008 08:59AM

Re: 3dmerge & 3dclust inconsistency

Liat July 30, 2008 09:34AM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 31, 2008 09:03PM

Re: 3dmerge & 3dclust inconsistency

Liat August 01, 2008 09:44AM

Re: 3dmerge & 3dclust inconsistency

jinny July 30, 2008 05:08PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 30, 2008 05:47PM

Re: 3dmerge & 3dclust inconsistency

jinny July 30, 2008 06:26PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 30, 2008 06:58PM

Re: 3dmerge & 3dclust inconsistency

jinny July 30, 2008 07:16PM

Re: 3dmerge & 3dclust inconsistency

jinny July 30, 2008 07:19PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 30, 2008 08:16PM

Re: 3dmerge & 3dclust inconsistency

jinny August 06, 2008 06:14PM

Re: 3dmerge & 3dclust inconsistency

Rachel July 29, 2008 05:08PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 29, 2008 10:24PM

Re: 3dmerge & 3dclust inconsistency

Rachel July 30, 2008 03:07PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 30, 2008 04:35PM

Re: 3dmerge & 3dclust inconsistency

Rachel July 30, 2008 06:03PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 30, 2008 07:12PM

Re: 3dmerge & 3dclust inconsistency

Rachel July 31, 2008 05:58PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 31, 2008 09:00PM