AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 30, 2008 04:35PM
Hi Rachel,

My 3dmerge results are exactly the same as the 3dclust results.

How are you evaluating whether they are the same or different?
Perhaps a good method would be to run 3dclust on your 3dmerge
dataset.

Suppose your 3dmerge dataset name is merge_result+orig. Run
the same 3dclust command on merge_result+orig, except set the
threshold to 0.01 and the minimum volume to 10, say. It should
give you the same output as from your z_stats dataset.

You could also count the number of non-zero voxels in it to be
sure the equivalent volume equals the total volume output by
3dclust.

------------------------------------------------------------
3dclust -1thresh 0.01 5.6 2 merge_result+orig
3dmaskave -mask merge_result+orig merge_result+orig
------------------------------------------------------------

If you multiply the number of voxels output by 3dmaskave by the
volume per voxel (which is 8 mm^3), you should get the total
volume reported by 3dclust.

- rick

Subject Author Posted

3dmerge & 3dclust inconsistency

Liat July 28, 2008 11:28AM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 28, 2008 12:41PM

Re: 3dmerge & 3dclust inconsistency

Liat July 28, 2008 12:56PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 28, 2008 09:53PM

Re: 3dmerge & 3dclust inconsistency

jinny July 28, 2008 01:11PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 28, 2008 10:01PM

Re: 3dmerge & 3dclust inconsistency

Liat July 29, 2008 03:50PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 29, 2008 10:09PM

Re: 3dmerge & 3dclust inconsistency

Liat July 30, 2008 08:24AM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 30, 2008 08:59AM

Re: 3dmerge & 3dclust inconsistency

Liat July 30, 2008 09:34AM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 31, 2008 09:03PM

Re: 3dmerge & 3dclust inconsistency

Liat August 01, 2008 09:44AM

Re: 3dmerge & 3dclust inconsistency

jinny July 30, 2008 05:08PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 30, 2008 05:47PM

Re: 3dmerge & 3dclust inconsistency

jinny July 30, 2008 06:26PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 30, 2008 06:58PM

Re: 3dmerge & 3dclust inconsistency

jinny July 30, 2008 07:16PM

Re: 3dmerge & 3dclust inconsistency

jinny July 30, 2008 07:19PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 30, 2008 08:16PM

Re: 3dmerge & 3dclust inconsistency

jinny August 06, 2008 06:14PM

Re: 3dmerge & 3dclust inconsistency

Rachel July 29, 2008 05:08PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 29, 2008 10:24PM

Re: 3dmerge & 3dclust inconsistency

Rachel July 30, 2008 03:07PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 30, 2008 04:35PM

Re: 3dmerge & 3dclust inconsistency

Rachel July 30, 2008 06:03PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 30, 2008 07:12PM

Re: 3dmerge & 3dclust inconsistency

Rachel July 31, 2008 05:58PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 31, 2008 09:00PM