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July 30, 2008 04:35PM
Hi Rachel,

My 3dmerge results are exactly the same as the 3dclust results.

How are you evaluating whether they are the same or different?
Perhaps a good method would be to run 3dclust on your 3dmerge
dataset.

Suppose your 3dmerge dataset name is merge_result+orig. Run
the same 3dclust command on merge_result+orig, except set the
threshold to 0.01 and the minimum volume to 10, say. It should
give you the same output as from your z_stats dataset.

You could also count the number of non-zero voxels in it to be
sure the equivalent volume equals the total volume output by
3dclust.

------------------------------------------------------------
3dclust -1thresh 0.01 5.6 2 merge_result+orig
3dmaskave -mask merge_result+orig merge_result+orig
------------------------------------------------------------

If you multiply the number of voxels output by 3dmaskave by the
volume per voxel (which is 8 mm^3), you should get the total
volume reported by 3dclust.

- rick

Subject Author Posted

3dmerge & 3dclust inconsistency

Liat July 28, 2008 11:28AM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 28, 2008 12:41PM

Re: 3dmerge & 3dclust inconsistency

Liat July 28, 2008 12:56PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 28, 2008 09:53PM

Re: 3dmerge & 3dclust inconsistency

jinny July 28, 2008 01:11PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 28, 2008 10:01PM

Re: 3dmerge & 3dclust inconsistency

Liat July 29, 2008 03:50PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 29, 2008 10:09PM

Re: 3dmerge & 3dclust inconsistency

Liat July 30, 2008 08:24AM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 30, 2008 08:59AM

Re: 3dmerge & 3dclust inconsistency

Liat July 30, 2008 09:34AM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 31, 2008 09:03PM

Re: 3dmerge & 3dclust inconsistency

Liat August 01, 2008 09:44AM

Re: 3dmerge & 3dclust inconsistency

jinny July 30, 2008 05:08PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 30, 2008 05:47PM

Re: 3dmerge & 3dclust inconsistency

jinny July 30, 2008 06:26PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 30, 2008 06:58PM

Re: 3dmerge & 3dclust inconsistency

jinny July 30, 2008 07:16PM

Re: 3dmerge & 3dclust inconsistency

jinny July 30, 2008 07:19PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 30, 2008 08:16PM

Re: 3dmerge & 3dclust inconsistency

jinny August 06, 2008 06:14PM

Re: 3dmerge & 3dclust inconsistency

Rachel July 29, 2008 05:08PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 29, 2008 10:24PM

Re: 3dmerge & 3dclust inconsistency

Rachel July 30, 2008 03:07PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 30, 2008 04:35PM

Re: 3dmerge & 3dclust inconsistency

Rachel July 30, 2008 06:03PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 30, 2008 07:12PM

Re: 3dmerge & 3dclust inconsistency

Rachel July 31, 2008 05:58PM

Re: 3dmerge & 3dclust inconsistency

rick reynolds July 31, 2008 09:00PM