AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 01, 2009 07:22PM
Why remove a constant before calculating a correlation? Correlation is invariant to a constant.

Anyway, the following bash code does what I need in my script, I'll put it here for posterity. Note that I'm doing this on a one-brick file; if you're reading this in the future and trying to apply it to your situation you will also have to pick out the brick you want.

# get the statpar line for the correlation for this file
statpar=$(3dinfo $file | grep 'statcode = fico;')
# get just the numbers (everything after the last equals sign)
statpar=${statpar##*=}
# replace allthe spaces with commas for input to ccalc
statpar=${statpar// /,}

# get the thresholds that correspond to the desired p-values for this one
t001=$(ccalc -expr "fico_p2t(0.001 ${statpar} )")
Subject Author Posted

thresholding on p-value in 3dmerge?

David Perlman January 29, 2009 08:18PM

Re: thresholding on p-value in 3dmerge?

David Perlman January 29, 2009 08:32PM

Re: thresholding on p-value in 3dmerge?

Bob Cox January 30, 2009 01:16PM

Re: thresholding on p-value in 3dmerge?

David Perlman February 01, 2009 02:35PM

Re: thresholding on p-value in 3dmerge?

bob cox February 01, 2009 03:57PM

Re: thresholding on p-value in 3dmerge?

David Perlman February 01, 2009 07:22PM

Re: thresholding on p-value in 3dmerge?

Tynan Stevens February 09, 2009 08:21PM

Re: thresholding on p-value in 3dmerge?

Colm Connolly February 10, 2009 04:39AM

Re: thresholding on p-value in 3dmerge?

Tynan Stevens February 10, 2009 08:58AM

Re: thresholding on p-value in 3dmerge?

Bob Cox February 02, 2009 10:23AM