AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Bob Cox
February 02, 2009 10:23AM
"Correlation is invariant to a constant."

Because the constant is removed in the correlation calculation. 3dfim+ also removes a linear trend, which is the extra degree of freedom that is lost.

If you look at the formula for the degrees of freedom of a correlation coefficient (or almost anything that involves a variance calculation, like a t-test), you'll see that there is 'n-1' somewhere (where n=number of samples): the '-1' is the allowance for the constant removal.

Personal hobby horse: 'degrees of freedom' should be called 'degrees of randomness' or (to keep the same DOF acronym) 'degrees of fluctuation'. When you have a collection of random numbers, then calculate some fit to them and subtract that out, you have reduced the amount of randomness present. The more parameters in the fit, the more randomness is reduced -- in the limit where you have n parameters and n samples, you'd have a perfect fit and no randomness left at all after subtraction.

Subject Author Posted

thresholding on p-value in 3dmerge?

David Perlman January 29, 2009 08:18PM

Re: thresholding on p-value in 3dmerge?

David Perlman January 29, 2009 08:32PM

Re: thresholding on p-value in 3dmerge?

Bob Cox January 30, 2009 01:16PM

Re: thresholding on p-value in 3dmerge?

David Perlman February 01, 2009 02:35PM

Re: thresholding on p-value in 3dmerge?

bob cox February 01, 2009 03:57PM

Re: thresholding on p-value in 3dmerge?

David Perlman February 01, 2009 07:22PM

Re: thresholding on p-value in 3dmerge?

Tynan Stevens February 09, 2009 08:21PM

Re: thresholding on p-value in 3dmerge?

Colm Connolly February 10, 2009 04:39AM

Re: thresholding on p-value in 3dmerge?

Tynan Stevens February 10, 2009 08:58AM

Re: thresholding on p-value in 3dmerge?

Bob Cox February 02, 2009 10:23AM